RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	MMP28	Q9H239	520 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	PDZD7	Q9H5P4	517 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	MAGIX	Q9H6Y5	334 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	RANGRF	Q9HD47	186 aa	Predicted RBP	4.55	□□□□□ -1.68
CD44-223	ENST00000526553	AASS	Q9UDR5	926 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	FBXL2	Q9UKC9	423 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	OR2W1	Q9Y3N9	320 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	ADAM18	Q9Y3Q7	739 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	ZNF711	Q9Y462	761 aa		4.55	□□□□□ -1.68
CD44-223	ENST00000526553	TDRD9	Q8NDG6	1382 aa	Known RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	HS3ST1	O14792	307 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	LINC01565	O15544	149 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	HCRTR2	O43614	444 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	LMX1B	O60663	402 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	WDR1	O75083	606 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	NDUFS3	O75489	264 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	DAB1	O75553	588 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	CRYAA	P02489	173 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	ANOS1	P23352	680 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	DCAF7	P61962	342 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	MRPS34	P82930	218 aa	Known RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	STPG1	Q5TH74	334 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	CCDC30	Q5VVM6	783 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	C18orf63	Q68DL7	685 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	TTI2	Q6NXR4	508 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	PAPD4	Q6PIY7	484 aa	Known RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	MEX3B	Q6ZN04	569 aa	Known RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	USP43	Q70EL4	1123 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	DSG4	Q86SJ6	1040 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	ZNF329	Q86UD4	541 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	SLC9B2	Q86UD5	537 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	GPR180	Q86V85	440 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	RNF168	Q8IYW5	571 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	METTL27	Q8N6F8	245 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	ACVR1C	Q8NER5	493 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	OR5R1	Q8NH85	324 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	KCNG4	Q8TDN1	519 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	DNAAF4	Q8WXU2	420 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	ARHGEF2	Q92974	986 aa	Known RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	NEUROD6	Q96NK8	337 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	EPYC	Q99645	322 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	LRRC1	Q9BTT6	524 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	SIL1	Q9H173	461 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	POLR1B	Q9H9Y6	1135 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	EHD2	Q9NZN4	543 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	CWC15	Q9P013	229 aa	Known RBP	4.54	□□□□□ -1.68
CD44-223	ENST00000526553	OR14J1	Q9UGF5	321 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	KLHL20	Q9Y2M5	609 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	WDR81	Q562E7	1941 aa		4.54	□□□□□ -1.68
CD44-223	ENST00000526553	FAM237B	A0A1B0GVD1	139 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	KANSL1L	A0AUZ9	987 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	C1orf226	A1L170	272 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	PGPEP1L	A6NFU8	196 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	PRSS47	A8MTI9	375 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	FAM90A26	D6RGX4	464 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	P2RY10	O00398	339 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	KCNN4	O15554	427 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	EIF2S1	P05198	315 aa	Known RBP	4.53	□□□□□ -1.68
CD44-223	ENST00000526553	UGT1A1	P22309	533 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	PRCP	P42785	496 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	FMO5	P49326	533 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	CLCN3	P51790	818 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	CLDN20	P56880	219 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	TFAP4	Q01664	338 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	GTF2H2	Q13888	395 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	RBBP5	Q15291	538 aa	Known RBP	4.53	□□□□□ -1.68
CD44-223	ENST00000526553	KRTAP24-1	Q3LI83	254 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	ITPRIPL1	Q6GPH6	555 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	LCN10	Q6JVE6	187 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	GTF2H2C	Q6P1K8	395 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	NCEH1	Q6PIU2	408 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-223	ENST00000526553	FASTKD5	Q7L8L6	764 aa	Known RBP	4.53	□□□□□ -1.68
CD44-223	ENST00000526553	PXK	Q7Z7A4	578 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	NFE4	Q86UQ8	179 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	HACE1	Q8IYU2	909 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	ADSSL1	Q8N142	457 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	PDILT	Q8N807	584 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	SLC38A5	Q8WUX1	472 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	NR4A3	Q92570	626 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	TIGD1	Q96MW7	591 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	WDFY2	Q96P53	400 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	NEURL2	Q9BR09	285 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	MUC13	Q9H3R2	512 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	SDF2L1	Q9HCN8	221 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	STK39	Q9UEW8	545 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	NRBP1	Q9UHY1	535 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	FBXW11	Q9UKB1	542 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	CLIC4	Q9Y696	253 aa		4.53	□□□□□ -1.68
CD44-223	ENST00000526553	SCAMP1	O15126	338 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	ZNHIT1	O43257	154 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	FGF17	O60258	216 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	ATP1A1	P05023	1023 aa	Known RBP	4.52	□□□□□ -1.69
CD44-223	ENST00000526553	SP1	P08047	785 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	FAM106CP	P0CH98	169 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	POLR2C	P19387	275 aa	Predicted RBP	4.52	□□□□□ -1.69
CD44-223	ENST00000526553	MARK3	P27448	753 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	ISL1	P61371	349 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	PNLIPRP3	Q17RR3	467 aa		4.52	□□□□□ -1.69
CD44-223	ENST00000526553	CCDC96	Q2M329	555 aa		4.52	□□□□□ -1.69

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