RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GDPD5Q8WTR4 605 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 VPS33AQ96AX1 596 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 PGAP3Q96FM1 320 aaPredicted RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 AGAP3Q96P47 875 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 NEK1Q96PY6 1258 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 AGAP2Q99490 1192 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 TCHPQ9BT92 498 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 H2AFJQ9BTM1 129 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 THUMPD3Q9BV44 507 aaKnown RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 PCED1AQ9H1Q7 454 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 SCPEP1Q9HB40 452 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 RNF146Q9NTX7 359 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 RBM28Q9NW13 759 aaKnown RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 AKAP7Q9P0M2 348 aaPredicted RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 ACTR3BQ9P1U1 418 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 DNAJB9Q9UBS3 223 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 INTS6Q9UL03 887 aaKnown RBP4.83□□□□□ -1.64
CD44-220ENST00000525688 ITM2BQ9Y287 266 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CAPN7Q9Y6W3 813 aa4.83□□□□□ -1.64
CD44-220ENST00000525688 CD163L1Q9NR16 1453 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 USP6P35125 1406 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 CPSF1Q10570 1443 aaKnown RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 AFF2P51816 1311 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 KIR2DS5A0A0G2JLQ3 304 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 A0A1W2PRG0 241 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 CLRN2A0PK11 232 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 KIR2DS3K7RE56 304 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 MCF2LO15068 1137 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 BCAT2O15382 392 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 STX6O43752 255 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 RTN2O75298 545 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 TMCC1O94876 653 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 OLFM2O95897 454 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 PNPP00491 289 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 HOXB5P09067 269 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 IRF1P10914 325 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 SLC2A4P14672 509 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 PAX7P23759 505 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 POU1F1P28069 291 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 PTGER1P34995 402 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 IFNAR2P48551 515 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 PMPCAQ10713 525 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 SLC10A2Q12908 348 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 FOXF2Q12947 444 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 STIM1Q13586 685 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 RNPS1Q15287 305 aaKnown RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 HIST2H2ACQ16777 129 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 SMU1Q2TAY7 513 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 MAJINQ3KP22 176 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 RABL6Q3YEC7 729 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 SLC9C1Q4G0N8 1177 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 CAVIN4Q5BKX8 364 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 TOR1AIP1Q5JTV8 583 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 KRBOX4Q5JUW0 171 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 PLEKHS1Q5SXH7 462 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 ZNF772Q68DY9 489 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 CYP20A1Q6UW02 462 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 DEF8Q6ZN54 512 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 ZNF788Q6ZQV5 615 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 FAM83HQ6ZRV2 1179 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 GGNQ86UU5 652 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 CCDC25Q86WR0 208 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 DZIP1Q86YF9 867 aaKnown RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 DDIASQ8IXT1 998 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 ZDHHC23Q8IYP9 409 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 ADGRF4Q8IZF3 695 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 GALNT16Q8N428 558 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 FRMD1Q8N878 549 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 BOLLQ8N9W6 283 aaKnown RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 SPATA20Q8TB22 786 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 SCFD2Q8WU76 684 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 SMARCE1Q969G3 411 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 FAM162AQ96A26 154 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 CFAP36Q96G28 342 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 GBP5Q96PP8 586 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 FAM118BQ9BPY3 351 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 PLEKHA4Q9H4M7 779 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 OPA3Q9H6K4 179 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 SPAG4Q9NPE6 437 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 TAB2Q9NYJ8 693 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 ANAPC5Q9UJX4 755 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 AGO2Q9UKV8 859 aaKnown RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 CORO1CQ9ULV4 474 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 COL11A2P13942 1736 aaPredicted RBP4.82□□□□□ -1.64
CD44-220ENST00000525688 SLIT2O94813 1529 aa4.82□□□□□ -1.64
CD44-220ENST00000525688 BCL9LQ86UU0 1499 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 NINLQ9Y2I6 1382 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 ABCA3Q99758 1704 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 CRYBG1Q9Y4K1 1723 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 FAM237BA0A1B0GVD1 139 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 LINC00854A0A1B0GVQ3 168 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 A0A1W2PQF6 199 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 C17orf102A2RUQ5 167 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 LRRC53A6NM62 1247 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 M0QX08 132 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 RHODO00212 210 aa4.81□□□□□ -1.64
CD44-220ENST00000525688 PRPF4O43172 522 aaKnown RBP eCLIP4.81□□□□□ -1.64
CD44-220ENST00000525688 SEC31AO94979 1220 aaKnown RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 TOP1P11387 765 aaKnown RBP4.81□□□□□ -1.64
CD44-220ENST00000525688 UNGP13051 313 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms