RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZKSCAN8Q15776 578 aaPredicted RBP3.85□□□□□ -1.79
CD44-217ENST00000525348 KRTAP27-1Q3LI81 207 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 CCDC184Q52MB2 194 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 C18orf63Q68DL7 685 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 KCTD8Q6ZWB6 473 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 GET4Q7L5D6 327 aaPredicted RBP3.85□□□□□ -1.79
CD44-217ENST00000525348 CACNA2D4Q7Z3S7 1137 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 ZNF583Q96ND8 569 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 QRFPRQ96P65 431 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 MAF1Q9H063 256 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 STK26Q9P289 416 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 GTF2A1LQ9UNN4 478 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 KLHL20Q9Y2M5 609 aa3.85□□□□□ -1.79
CD44-217ENST00000525348 A0A1W2PP11 408 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 A0A1W2PRG0 241 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 FAM90A26D6RGX4 464 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 M0QZ24 198 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 NTN3O00634 580 aaPredicted RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 SEC14L2O76054 403 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 KCNK5O95279 499 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 AMBPP02760 352 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 ANOS1P23352 680 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 CALRP27797 417 aaKnown RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 HOXC9P31274 260 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 UBA7P41226 1012 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 CRIP2P52943 208 aaPredicted RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 RARSP54136 660 aaKnown RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 RPL7AP62424 266 aaKnown RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 GRIK2Q13002 908 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 DCTN2Q13561 401 aaKnown RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 SIRPB2Q5JXA9 342 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 DCST1Q5T197 706 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 PLA2G4FQ68DD2 849 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 OR7E24Q6IFN5 339 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 FAM171BQ6P995 826 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 CYP20A1Q6UW02 462 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 ATF7IPQ6VMQ6 1270 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 OR52I2Q8NH67 350 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 ZNF501Q96CX3 271 aaPredicted RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 NEUROD6Q96NK8 337 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 WDFY2Q96P53 400 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 POLR3CQ9BUI4 534 aaPredicted RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 RANBP17Q9H2T7 1088 aaKnown RBP3.84□□□□□ -1.79
CD44-217ENST00000525348 POLR1BQ9H9Y6 1135 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 HCFC1R1Q9NWW0 138 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 GAB2Q9UQC2 676 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 CLIC4Q9Y696 253 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 RPGRIP1LQ68CZ1 1315 aa3.84□□□□□ -1.79
CD44-217ENST00000525348 ZCWPW2A0A1B0GU75 182 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 C5orf60A6NFR6 353 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 EIF3CLB5ME19 914 aaKnown RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 ZNHIT1O43257 154 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 MLYCDO95822 493 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 POLR2CP19387 275 aaPredicted RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 UBA1P22314 1058 aaKnown RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 PAX3P23760 479 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 ANP32AP39687 249 aaKnown RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 COG7P83436 770 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 RPL24P83731 157 aaKnown RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 DMTNQ08495 405 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 TBCEQ15813 527 aaPredicted RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 CCNG2Q16589 344 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 TSTQ16762 297 aaKnown RBP3.83□□□□□ -1.8
CD44-217ENST00000525348 KRTCAP3Q53RY4 240 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 PMS2CLQ68D20 193 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 LCN10Q6JVE6 187 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 MAP7D3Q8IWC1 876 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 TMEM116Q8NCL8 245 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 KLHDC9Q8NEP7 349 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 TMEM68Q96MH6 324 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 MAP7D2Q96T17 732 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 LRRC1Q9BTT6 524 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 JMJD4Q9H9V9 463 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 DLGAP2Q9P1A6 1054 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 COPG2Q9UBF2 871 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 FBXL2Q9UKC9 423 aa3.83□□□□□ -1.8
CD44-217ENST00000525348 ZCCHC6Q5VYS8 1495 aaKnown RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 ANKRD28O15084 1053 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 EIF3DO15371 548 aaKnown RBP eCLIP3.82□□□□□ -1.8
CD44-217ENST00000525348 CREB3O43889 395 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 WISP2O76076 250 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 FAM106CPP0CH98 169 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 UGT1A1P22309 533 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 TDO2P48775 406 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 CCR9P51686 369 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 CSTF3Q12996 717 aaKnown RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 DPCR1Q3MIW9 517 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 C1QTNF12Q5T7M4 302 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 INTS11Q5TA45 600 aaKnown RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 TAF3Q5VWG9 929 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 NSUN5P2Q63ZY6 315 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 TTI2Q6NXR4 508 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 PAPD4Q6PIY7 484 aaKnown RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 GPR180Q86V85 440 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 METTL27Q8N6F8 245 aaPredicted RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 RBM15BQ8NDT2 890 aaKnown RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 THAP6Q8TBB0 222 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 ITFG2Q969R8 447 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 LINGO1Q96FE5 620 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 SEC62Q99442 399 aaKnown RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms