RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PRR7Q8TB68 274 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 SLC25A23Q9BV35 468 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 ACTL8Q9H568 366 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 AKIRIN1Q9H9L7 192 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 TAS2R14Q9NYV8 317 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 VPS18Q9P253 973 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 PCDHGA6Q9Y5G7 932 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 CELSR2Q9HCU4 2923 aa20.07■□□□□ 0.8
SQSTM1-215ENST00000514093 LILRA5A6NI73 299 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 TMCO5BA8MYB1 307 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 TCP11X1B4DZS4 312 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 UBXN7O94888 489 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 TIAF1O95411 115 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 CLDN7O95471 211 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 CLDN1O95832 211 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 PYGLP06737 847 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 SLC2A4P14672 509 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 GARSP41250 739 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 MMP13P45452 471 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 STC1P52823 247 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 RPS18P62269 152 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 UBE2IP63279 158 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 IL11RAQ14626 422 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 INPP5JQ15735 1006 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 MARC1Q5VT66 337 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 FAM199XQ6PEV8 388 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 NDUFAF2Q8N183 169 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 TRIM7Q9C029 511 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF768Q9H5H4 540 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 ARFGAP3Q9NP61 516 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 NT5MQ9NPB1 228 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 LHX9Q9NQ69 397 aa20.06■□□□□ 0.8
SQSTM1-215ENST00000514093 CRYBG3Q68DQ2 2970 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 A0A0J9YYE9 177 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 OR5K4A6NMS3 321 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 FADS2P1A8MWK0 482 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 PRPSAP2O60256 369 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 FZD6O60353 706 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 SORBS2O94875 1100 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 TRBC1P01850 177 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 FGF5P12034 268 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 HCAR3P49019 387 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 EPHB1P54762 984 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 ITKQ08881 620 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF648Q5T619 568 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 TMEM26Q6ZUK4 368 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 MAMDC2Q7Z304 686 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 PCMTD1Q96MG8 357 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 WDR24Q96S15 920 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 OSGEPL1Q9H4B0 414 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 MAP10Q9P2G4 905 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 SIK3Q9Y2K2 1263 aa20.05■□□□□ 0.8
SQSTM1-215ENST00000514093 ARGFXA6NJG6 315 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 GRID2O43424 1007 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 RNF8O76064 485 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 DDAH2O95865 285 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 RECKO95980 971 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF30P17039 623 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 IHHQ14623 411 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 KRT31Q15323 416 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 RALGPS1Q5JS13 557 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 FKBP15Q5T1M5 1219 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 FAM92BQ6ZTR7 304 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 PHYKPLQ8IUZ5 450 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 NSMCE1Q8WV22 266 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 MFRPQ9BY79 579 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 KLC4Q9NSK0 619 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 PARVAQ9NVD7 372 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF624Q9P2J8 865 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 CHKBQ9Y259 395 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF106Q9H2Y7 1883 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 LRBAP50851 2863 aa20.04■□□□□ 0.8
SQSTM1-215ENST00000514093 GOLGA6L3A6NEY3 463 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 VIPP01282 170 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 SLC19A1P41440 591 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 CACHD1Q5VU97 1274 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 TMCO3Q6UWJ1 677 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 PPP1R3BQ86XI6 285 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 ATPAF2Q8N5M1 289 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 RSC1A1Q92681 617 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 BRD8Q9H0E9 1235 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 ZWILCHQ9H900 591 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 RMI1Q9H9A7 625 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 ACSS2Q9NR19 701 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 ATXN10Q9UBB4 475 aa20.03■□□□□ 0.8
SQSTM1-215ENST00000514093 MED13Q9UHV7 2174 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 PRRC2CQ9Y520 2896 aaKnown RBP20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 C21orf140B9A014 251 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 H3BRJ5 948 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 TOX3O15405 576 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 NUAK1O60285 661 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 MT-ND3P03897 115 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 ZNF8P17098 575 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 UBE2HP62256 183 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 SEPT7Q16181 437 aaKnown RBP20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 SMTNL2Q2TAL5 461 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 PLA2G4EQ3MJ16 856 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.02■□□□□ 0.88e-7■■□□□ 14.1
SQSTM1-215ENST00000514093 TRIM48Q8IWZ4 208 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 NEK11Q8NG66 645 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms