RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 IDO1P14902 403 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 CPT1AP50416 773 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 TRAF2Q12933 501 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 LCP2Q13094 533 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 AAK1Q2M2I8 961 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 OGFOD2Q6N063 350 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SYVN1Q86TM6 617 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 STAG3L4Q8TBR4 150 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SGCDQ92629 289 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 SERPINB11Q96P15 392 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 PLEKHG4BQ96PX9 1271 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 TRIM62Q9BVG3 475 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 ZFYVE28Q9HCC9 887 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 PKD2L2Q9NZM6 624 aa9.2□□□□□ -0.94
LIMCH1-215ENST00000512632 DOCK3Q8IZD9 2030 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SH3PXD2BA1X283 911 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GPIP06744 558 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 RHOQP17081 205 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GNASQ5JWF2 1037 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 KANK2Q63ZY3 851 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TRIM74Q86UV6 250 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TRIM73Q86UV7 250 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 MYEOVQ96EZ4 313 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 CDKN2AIPNLQ96HQ2 116 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GPR21Q99679 349 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PTPN18Q99952 460 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 AARSD1Q9BTE6 412 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 HGH1Q9BTY7 390 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SPON2Q9BUD6 331 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 IFT80Q9P2H3 777 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ASB1Q9Y576 335 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TRPV2Q9Y5S1 764 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GMEB1Q9Y692 573 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 NPEPPSL1A6NEC2 478 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SYNCRIPO60506 623 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 RAMP2O60895 175 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC22A3O75751 556 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 IL12AP29459 219 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 POLR2IP36954 125 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC26A3P40879 764 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 IST1P53990 364 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ARPP19P56211 112 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF235Q14590 738 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PTPRRQ15256 657 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 RBBP7Q16576 425 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PTPRNQ16849 979 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GLYATQ6IB77 296 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 MSANTD2Q6P1R3 559 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SPRED1Q7Z699 444 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PATL1Q86TB9 770 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 STK32CQ86UX6 486 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 LRRC49Q8IUZ0 686 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 LRRC43Q8N309 656 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 FNDC5Q8NAU1 212 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PDZD8Q8NEN9 1154 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 BPIFB6Q8NFQ5 453 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 RMDN1Q96DB5 314 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PKMYT1Q99640 499 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SGIP1Q9BQI5 828 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ADNPQ9H2P0 1102 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC52A3Q9NQ40 469 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GMIPQ9P107 970 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SUN2Q9UH99 717 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF225Q9UK10 706 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PTBP2Q9UKA9 531 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GIT1Q9Y2X7 761 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SNX2O60749 519 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 OR4F21O95013 312 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 KCNH1O95259 989 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ALBP02768 609 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 OR1E1P30953 314 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 MTPNP58546 118 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 NFKB2Q00653 900 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TTC9BQ8N6N2 239 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 KLHDC9Q8NEP7 349 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 OR4K2Q8NGD2 314 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 LZICQ8WZA0 190 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ITFG2Q969R8 447 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 GFM2Q969S9 779 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ING2Q9H160 280 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 HACD3Q9P035 362 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 PADI3Q9ULW8 664 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 LOC285095A0A1B0GVY8 99 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 NDUFS3O75489 264 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 RPP40O75818 363 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 MATN4O95460 622 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 NFKBIAP25963 317 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 POLR2JP52435 117 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 DGKQP52824 942 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 C9orf131Q5VYM1 1079 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TAF2Q6P1X5 1199 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF554Q86TJ5 538 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 CLEC4FQ8N1N0 589 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 ASB2Q96Q27 587 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 SEZ6LQ9BYH1 1024 aa9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TFB2MQ9H5Q4 396 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 TUBA8Q9NY65 449 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-215ENST00000512632 RALGAPA2Q2PPJ7 1873 aa9.18□□□□□ -0.94
LIMCH1-215ENST00000512632 RSL1D1O76021 490 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-215ENST00000512632 UGT1A1P22309 533 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms