RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PAPSS2O95340 614 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 PRAMEF1O95521 474 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 ATXN8OSP0DMR3 200 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 GJA9P57773 515 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 PRKCZQ05513 592 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 SOX4Q06945 474 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 OLIG2Q13516 323 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 C16orf72Q14CZ0 275 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 CPSF6Q16630 551 aaKnown RBP eCLIP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 TRAPPC5Q8IUR0 188 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 SIDT2Q8NBJ9 832 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 KBTBD7Q8WVZ9 684 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 TOP1MTQ969P6 601 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 ASB9Q96DX5 294 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 C1orf74Q96LT6 269 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 QRFPRQ96P65 431 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 CIB1Q99828 191 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 LRTM1Q9HBL6 345 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 SPACA6W5XKT8 324 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 ALDOAP04075 364 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 LIPEQ05469 1076 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 CRHR2Q13324 411 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 TSNQ15631 228 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 DGUOKQ16854 277 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 SPESP1Q6UW49 350 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM47BQ8NA70 645 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 FBXO22Q8NEZ5 403 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 OR6K2Q8NGY2 324 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 IPPKQ9H8X2 491 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 FKBPLQ9UIM3 349 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 PCDHGC4Q9Y5F7 938 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 COPG1Q9Y678 874 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 LOXHD1Q8IVV2 1947 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 BHMG1C9JSJ3 638 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 G3V2T6 193 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 H3BNX3 289 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 RFXANKO14593 260 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM189A1O60320 539 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 ALDH1A2O94788 518 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 COL6A1P12109 1028 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 ALDH9A1P49189 494 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 DNAJB13P59910 316 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 IRF5Q13568 498 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 GLYATQ6IB77 296 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 UTP15Q8TED0 518 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 POLR3BQ9NW08 1133 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 SLC2A6Q9UGQ3 507 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 VPS4AQ9UN37 437 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 TDRKHQ9Y2W6 561 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 LRRC42Q9Y546 428 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 SQORQ9Y6N5 450 aa10.7□□□□□ -0.7
LIMCH1-205ENST00000503057 PTGES3LE9PB15 166 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 PCDH8O95206 1070 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 PPIBP23284 216 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 POU1F1P28069 291 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ZIK1Q3SY52 487 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ANXA8L1Q5VT79 327 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 SULT1C3Q6IMI6 304 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 LINGO4Q6UY18 593 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 LEMD2Q8NC56 503 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 LRTOMTQ8WZ04 291 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 CENPNQ96H22 339 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 FCRL3Q96P31 734 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TDRD1Q9BXT4 1180 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 PAIP1Q9H074 479 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 EVLQ9UI08 416 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 PAIP2BQ9ULR5 123 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TULP3O75386 442 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ACLYP53396 1101 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 C21orf59P57076 290 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 DEFB115Q30KQ5 88 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 FRMD7Q6ZUT3 714 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 BBS2Q9BXC9 721 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM88BA6NKF7 163 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 C9IYK1 514 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM72CH0Y354 149 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 BEST1O76090 585 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 CLDN9O95484 217 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TOP3BO95985 862 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM72AQ5TYM5 149 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM72DQ6L9T8 149 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ASRGL1Q7L266 308 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM72BQ86X60 149 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TRIM48Q8IWZ4 208 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 SLAIN1Q8ND83 568 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ZNF570Q96NI8 536 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 PANX1Q96RD7 426 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ZBTB26Q9HCK0 441 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ZNHIT2Q9UHR6 403 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 KLHL20Q9Y2M5 609 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 J3KR12 359 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 KERAO60938 352 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 EFCAB14O75071 495 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 CXCR2P25025 360 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 CRATP43155 626 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 MAGEA11P43364 429 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ST13P50502 369 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 SLC44A4Q53GD3 710 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 CDHR3Q6ZTQ4 885 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 SERPINA9Q86WD7 417 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms