RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 STX16O14662 325 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PRMT5O14744 637 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 GSC2O15499 205 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 BUD23O43709 281 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 KLHL41O60662 606 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ZMPSTE24O75844 475 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 MLYCDO95822 493 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 TRBC1P01850 177 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ASLP04424 464 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PRKCGP05129 697 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 POU2F2P09086 479 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PABPC1P11940 636 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 CD1DP15813 335 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 TCF3P15923 654 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 POLR2EP19388 210 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 CHRM3P20309 590 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 IMPDH1P20839 514 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 XPAP23025 273 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 RPS3P23396 243 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP39-219ENST00000496047 FSHRP23945 695 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PSMA3P25788 255 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 FMO4P31512 558 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 HMGCLP35914 325 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 RGRP47804 291 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 EPHA5P54756 1037 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 IL2P60568 153 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ST8SIA6P61647 398 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 AP2B1P63010 937 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 HERVK_113P63132 956 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ARHGAP8P85298 464 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 LMAN2Q12907 356 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CUL3Q13618 768 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CYLC2Q14093 348 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 ARHGEF7Q14155 803 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 SQLEQ14534 574 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PDCD2Q16342 344 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 GPR33Q49SQ1 333 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ACCSLQ4AC99 568 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PITRM1Q5JRX3 1037 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ANKS6Q68DC2 871 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 C22orf39Q6P5X5 142 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 LILRA6Q6PI73 481 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 SNX20Q7Z614 316 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 NET1Q7Z628 596 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 ADAMTSL2Q86TH1 951 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 TTC7BQ86TV6 843 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CUZD1Q86UP6 607 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CCDC116Q8IYX3 515 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CHCHD4Q8N4Q1 142 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 TXNDC5Q8NBS9 432 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 FAM13CQ8NE31 585 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 MDGA1Q8NFP4 955 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 OR52K2Q8NGK3 314 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 RP9Q8TA86 221 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 HERVK_113Q902F9 699 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 LPGAT1Q92604 370 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 KCNJ9Q92806 393 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 BADQ92934 168 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PPP2R3CQ969Q6 453 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 KIAA1191Q96A73 305 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 SGF29Q96ES7 293 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 RSRC1Q96IZ7 334 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 UBXN10Q96LJ8 280 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CYP2S1Q96SQ9 504 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 RTKNQ9BST9 563 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 HTATIP2Q9BUP3 242 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 BBS2Q9BXC9 721 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 ERVK-6Q9BXR3 956 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 VCX3BQ9H321 246 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 RNPEPL1Q9HAU8 725 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 CYP4F12Q9HCS2 524 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 TDP1Q9NUW8 608 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 DNAAF2Q9NVR5 837 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 NUDT4Q9NZJ9 180 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 PKD2L2Q9NZM6 624 aa6.88□□□□□ -1.31
USP39-219ENST00000496047 MARCH4Q9P2E8 410 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 EVLQ9UI08 416 aaPredicted RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 TCF20Q9UGU0 1960 aaKnown RBP6.88□□□□□ -1.31
USP39-219ENST00000496047 GLYATL1P3A0A0U1RQE8 302 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.87□□□□□ -1.31
USP39-219ENST00000496047 NEDD8-MDP1E9PL57 170 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 GFRA2O00451 464 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 BTN3A1O00481 513 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 CCL22O00626 93 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 AURKAO14965 403 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 RAD51BO15315 384 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 HTRA2O43464 458 aaPredicted RBP6.87□□□□□ -1.31
USP39-219ENST00000496047 DCXO43602 365 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 FZD6O60353 706 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 FKBP6O75344 327 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 SKAP2O75563 359 aaPredicted RBP6.87□□□□□ -1.31
USP39-219ENST00000496047 TM7SF2O76062 418 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 PRAMEF1O95521 474 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 POP4O95707 220 aaKnown RBP6.87□□□□□ -1.31
USP39-219ENST00000496047 CHRNGP07510 517 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 RHOP08100 348 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 F7P08709 466 aaPredicted RBP6.87□□□□□ -1.31
USP39-219ENST00000496047 T-ENOLP0DO92 83 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 COX4I1P13073 169 aa6.87□□□□□ -1.31
USP39-219ENST00000496047 ZNF30P17039 623 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms