RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 TIGD7Q6NT04 549 aaPredicted RBP12.51□□□□□ -0.41
SKA1-205ENST00000494518 CRTC3Q6UUV7 619 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 KDELC2Q7Z4H8 507 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 ARHGAP22Q7Z5H3 698 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 KCTD6Q8NC69 237 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 CCNYQ8ND76 341 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 ZNF564Q8TBZ8 553 aaPredicted RBP12.51□□□□□ -0.41
SKA1-205ENST00000494518 CEP41Q9BYV8 373 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 OSGEPL1Q9H4B0 414 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 STN1Q9H668 368 aaKnown RBP12.51□□□□□ -0.41
SKA1-205ENST00000494518 SARS2Q9NP81 518 aaKnown RBP12.51□□□□□ -0.41
SKA1-205ENST00000494518 PRDM8Q9NQV8 689 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 DTLQ9NZJ0 730 aa12.51□□□□□ -0.41
SKA1-205ENST00000494518 RCOR3Q9P2K3 495 aaPredicted RBP12.51□□□□□ -0.41
SKA1-205ENST00000494518 MRPS18BQ9Y676 258 aaKnown RBP12.51□□□□□ -0.41
SKA1-205ENST00000494518 TNRC6AQ8NDV7 1962 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 SPTBN1Q01082 2364 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 UTP20O75691 2785 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 NBPF19A0A087WUL8 3843 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 KCNK1O00180 336 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 STK17BO94768 372 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 JCHAINP01591 159 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 SERPING1P05155 500 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 MMP2P08253 660 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 ZNF8P17098 575 aaPredicted RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 CA4P22748 312 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 OAS2P29728 719 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 SPINT3P49223 89 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 GFERP55789 205 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 MC2RQ01718 297 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 SLC10A2Q12908 348 aaPredicted RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 SEPT7Q16181 437 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 DEFB109BQ30KR1 87 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 HENMT1Q5T8I9 393 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 CAVIN1Q6NZI2 390 aaKnown RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 C16orf46Q6P387 395 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 IYDQ6PHW0 289 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 CEACAM20Q6UY09 585 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 LYSMD3Q7Z3D4 306 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 SLC9B2Q86UD5 537 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 NLRP8Q86W28 1048 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 LRRC49Q8IUZ0 686 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 NLGN4XQ8N0W4 816 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 PQLC3Q8N755 202 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 NLGN4YQ8NFZ3 816 aaPredicted RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 FAM71BQ8TC56 605 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 EPN3Q9H201 632 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 OR2AG1Q9H205 316 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 ADNPQ9H2P0 1102 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 FAM83DQ9H4H8 585 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 KLC4Q9NSK0 619 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 PKD2L2Q9NZM6 624 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 VPS18Q9P253 973 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 PDP2Q9P2J9 529 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 ATXN10Q9UBB4 475 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 CPNE7Q9UBL6 633 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 DNPEPQ9ULA0 475 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 SHOC2Q9UQ13 582 aa12.5□□□□□ -0.41
SKA1-205ENST00000494518 USP9XQ93008 2570 aaPredicted RBP12.5□□□□□ -0.41
SKA1-205ENST00000494518 A6NCN8 305 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 GRID2O43424 1007 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 F3P13726 295 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 TYRP1P17643 537 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 CCNCP24863 283 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 FANCCQ00597 558 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 FOXM1Q08050 763 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 CDC20Q12834 499 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 ZBTB17Q13105 803 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 IQCB1Q15051 598 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 IGFBP7Q16270 282 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 FIGNQ5HY92 759 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 ALKBH5Q6P6C2 394 aaKnown RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 WDR74Q6RFH5 385 aaPredicted RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 B4GALNT4Q76KP1 1039 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 CCDC13Q8IYE1 715 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 CCHCR1Q8TD31 782 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 KIAA1143Q96AT1 154 aaPredicted RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 EID2BQ96D98 161 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 ELMO2Q96JJ3 720 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 SLC45A3Q96JT2 553 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 TSGA13Q96PP4 275 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 TEFMQ96QE5 360 aaKnown RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 ZNF670Q9BS34 389 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 HERPUD2Q9BSE4 406 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 MLPHQ9BV36 600 aaPredicted RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 SPATA16Q9BXB7 569 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 PACSIN1Q9BY11 444 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 SCHIP1Q9P0W5 487 aaPredicted RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 CTTNBP2NLQ9P2B4 639 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 DNAJC16Q9Y2G8 782 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 USP9YO00507 2555 aaPredicted RBP12.49□□□□□ -0.41
SKA1-205ENST00000494518 SPTBP11277 2137 aa12.49□□□□□ -0.41
SKA1-205ENST00000494518 ANKRD66B4E2M5 251 aa12.48□□□□□ -0.41
SKA1-205ENST00000494518 POLR1CO15160 346 aaPredicted RBP12.48□□□□□ -0.41
SKA1-205ENST00000494518 NUAK1O60285 661 aa12.48□□□□□ -0.41
SKA1-205ENST00000494518 MTX2O75431 263 aa12.48□□□□□ -0.41
SKA1-205ENST00000494518 PROSCO94903 275 aa12.48□□□□□ -0.41
SKA1-205ENST00000494518 ZNF28P17035 718 aa12.48□□□□□ -0.41
SKA1-205ENST00000494518 NR1D1P20393 614 aa12.48□□□□□ -0.41
SKA1-205ENST00000494518 CES1P23141 567 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms