RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADHFE1Q8IWW8 467 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 CENPSQ8N2Z9 138 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 MCOLN3Q8TDD5 553 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SMOQ99835 787 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SPG21Q9NZD8 308 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 IGSF9Q9P2J2 1179 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 SNX8Q9Y5X2 465 aa16.23■□□□□ 0.19
CCDC88B-209ENST00000494080 USP54Q70EL1 1684 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 TRAV19A0A0A6YYK7 116 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 CAMK2GQ13555 558 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 VPS26BQ4G0F5 336 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 TIGD2Q4W5G0 525 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 REP15Q6BDI9 236 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 HJURPQ8NCD3 748 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 FAM126AQ9BYI3 521 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 PNPLA8Q9NP80 782 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 GLI3P10071 1580 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 E7ENX8 843 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 CLDN11O75508 207 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 EDN1P05305 212 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 MERTKQ12866 999 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 TJAP1Q5JTD0 557 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 CEP78Q5JTW2 689 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 SDE2Q6IQ49 451 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 USP45Q70EL2 814 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 SLC25A51Q9H1U9 297 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 TMEM245Q9H330 911 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 SH3BP4Q9P0V3 963 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 C4AP0C0L4 1744 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 HNRNPCL2B2RXH8 293 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 CST1P01037 141 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 ZNF37AP17032 561 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 SLC7A1P30825 629 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 SNRPD1P62314 119 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 HECTD2Q5U5R9 776 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 DCBLD1Q8N8Z6 715 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 OTULINQ96BN8 352 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 TCAF1Q9Y4C2 921 aa16.22■□□□□ 0.19
CCDC88B-209ENST00000494080 EI24O14681 340 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 POLR2EP19388 210 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 GLUD2P49448 558 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 THAP5Q7Z6K1 395 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 ASB2Q96Q27 587 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 ATP13A3Q9H7F0 1226 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 CRTAC1Q9NQ79 661 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 ZNHIT2Q9UHR6 403 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 LEF1Q9UJU2 399 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 U3KQV3 271 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 YBEYP58557 167 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 TAS2R39P59534 338 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 POLR2LP62875 67 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 HNRNPDQ14103 355 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 CCNYL2Q5T2Q4 361 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 OTOP2Q7RTS6 562 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 HOPXQ9BPY8 73 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 RMND5AQ9H871 391 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 ANKRD36CQ5JPF3 1778 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 TTC24A2A3L6 582 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 TNFRSF21O75509 655 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 TYMPP19971 482 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 KCNJ11Q14654 390 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 PARP15Q460N3 678 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 RAB2BQ8WUD1 216 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 PHF21AQ96BD5 680 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 LINGO1Q96FE5 620 aa16.21■□□□□ 0.19
CCDC88B-209ENST00000494080 SH3PXD2BA1X283 911 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 KCNH1O95259 989 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 LINC00032P0C843 101 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 CYP2A7P20853 494 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 DGKAP23743 735 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 CCND3P30281 292 aaPredicted RBP16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 ERAP2Q6P179 960 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 CNSTQ6PJW8 725 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 CCDC149Q6ZUS6 474 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 PDPRQ8NCN5 879 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 DPF3Q92784 378 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 NTAN1Q96AB6 310 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 R3HDMLQ9H3Y0 253 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 ZFP14Q9HCL3 533 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 CLCA2Q9UQC9 943 aa16.21■□□□□ 0.18
CCDC88B-209ENST00000494080 PIRO00625 290 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 FBP2O00757 339 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CXCL14O95715 111 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 EOMESO95936 686 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 LDLRAD1Q5T700 205 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 FIBCD1Q8N539 461 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 NAT16Q8N8M0 369 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ASB9Q96DX5 294 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF232Q9UNY5 417 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 MEIS3P2A8K0S8 358 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ACSL4O60488 711 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 XYLBO75191 536 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ABCB1P08183 1280 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 EPB42P16452 691 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 RAB14P61106 215 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CLEC6AQ6EIG7 209 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 TMEM214Q6NUQ4 689 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CLYBLQ8N0X4 340 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 TBC1D19Q8N5T2 526 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms