RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 RANBP17Q9H2T7 1088 aaKnown RBP3.56□□□□□ -1.84
HMGN1-218ENST00000490032 UPF2Q9HAU5 1272 aaKnown RBP3.56□□□□□ -1.84
HMGN1-218ENST00000490032 LUZP4Q9P127 313 aa3.56□□□□□ -1.84
HMGN1-218ENST00000490032 SLC13A4Q9UKG4 626 aa3.56□□□□□ -1.84
HMGN1-218ENST00000490032 GJD2Q9UKL4 321 aa3.56□□□□□ -1.84
HMGN1-218ENST00000490032 A0A1W2PRG0 241 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 OR5K3A6NET4 321 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 RRN3P2A6NIE6 340 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 ANKRD28O15084 1053 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 EPHA8P29322 1005 aaPredicted RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 AMPHP49418 695 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 CTCFP49711 727 aaPredicted RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 GNB1P62873 340 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 TBX2Q13207 712 aaPredicted RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 BIRC3Q13489 604 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 KRT71Q3SY84 523 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 CDC73Q6P1J9 531 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 NOTCH2NLQ7Z3S9 236 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 MYPOPQ86VE0 399 aaPredicted RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 STPG4Q8N801 248 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 SLC44A1Q8WWI5 657 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 DNAAF4Q8WXU2 420 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 TMEM190Q8WZ59 177 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 STAMBPL1Q96FJ0 436 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 TMEM68Q96MH6 324 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 NEUROD6Q96NK8 337 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 STRA6Q9BX79 667 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 MOV10L1Q9BXT6 1211 aaKnown RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 WASH6PQ9NQA3 447 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 TCP11L1Q9NUJ3 509 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 SAGE1Q9NXZ1 904 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 MAP3K20Q9NYL2 800 aaKnown RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 MARCH4Q9P2E8 410 aaPredicted RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 NAALADL1Q9UQQ1 740 aa3.55□□□□□ -1.84
HMGN1-218ENST00000490032 LRRFIP2Q9Y608 721 aaKnown RBP3.55□□□□□ -1.84
HMGN1-218ENST00000490032 IGKV3D-15A0A087WSY6 115 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 C5orf60A6NFR6 353 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ZNF500O60304 480 aaPredicted RBP3.54□□□□□ -1.84
HMGN1-218ENST00000490032 PDE9AO76083 593 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 BAG4O95429 457 aaKnown RBP3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ERVK-10P10266 1014 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 CSF2RAP15509 400 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 COG7P83436 770 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 CDONQ4KMG0 1287 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 TECRLQ5HYJ1 363 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ZC2HC1BQ5TFG8 222 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 Q75L30 129 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 GSTA5Q7RTV2 222 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 TRPT1Q86TN4 253 aaKnown RBP3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ADSSL1Q8N142 457 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ADAD2Q8NCV1 583 aaKnown RBP3.54□□□□□ -1.84
HMGN1-218ENST00000490032 OR14L1PQ8NHC6 308 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 PHF21AQ96BD5 680 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ARHGEF26Q96DR7 871 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 ASCL2Q99929 193 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 FSD1Q9BTV5 496 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 MAGIXQ9H6Y5 334 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 SLC28A3Q9HAS3 691 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 UBA2Q9UBT2 640 aaPredicted RBP3.54□□□□□ -1.84
HMGN1-218ENST00000490032 MKLN1Q9UL63 735 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 CAMK2AQ9UQM7 478 aa3.54□□□□□ -1.84
HMGN1-218ENST00000490032 A0A1W2PPI3 338 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 ERI2A8K979 691 aaKnown RBP3.53□□□□□ -1.84
HMGN1-218ENST00000490032 PAGE4O60829 102 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 TBX6O95947 436 aaPredicted RBP3.53□□□□□ -1.84
HMGN1-218ENST00000490032 KRT5P13647 590 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 IL7RP16871 459 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 HOXC8P31273 242 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 NR2C2P49116 596 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 MLLT10P55197 1068 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 DCTN2Q13561 401 aaKnown RBP3.53□□□□□ -1.84
HMGN1-218ENST00000490032 ACVR2BQ13705 512 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 KIR2DS3Q14952 304 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 TSSK4Q6SA08 328 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 RBM15BQ8NDT2 890 aaKnown RBP3.53□□□□□ -1.84
HMGN1-218ENST00000490032 FCAMRQ8WWV6 532 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 ABHD8Q96I13 439 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 AGXT2Q9BYV1 514 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 SIL1Q9H173 461 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 LRMDAQ9H2I8 198 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 OR14J1Q9UGF5 321 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 ACAD8Q9UKU7 415 aa3.53□□□□□ -1.84
HMGN1-218ENST00000490032 COL2A1P02458 1487 aaPredicted RBP3.53□□□□□ -1.84
HMGN1-218ENST00000490032 TP53BP1Q12888 1972 aaPredicted RBP3.52□□□□□ -1.85
HMGN1-218ENST00000490032 ANKRD66B4E2M5 251 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 BUD23O43709 281 aaKnown RBP3.52□□□□□ -1.85
HMGN1-218ENST00000490032 NKX2-2O95096 273 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 PRSS56P0CW18 603 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 XBP1P17861 261 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 CHRNB4P30926 498 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 ELF1P32519 619 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 MAPK9P45984 424 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 TUBP50607 506 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 DHX8Q14562 1220 aaKnown RBP3.52□□□□□ -1.85
HMGN1-218ENST00000490032 ZC2HC1CQ53FD0 456 aaPredicted RBP3.52□□□□□ -1.85
HMGN1-218ENST00000490032 SOWAHCQ53LP3 525 aaPredicted RBP3.52□□□□□ -1.85
HMGN1-218ENST00000490032 RAB6CQ53S08 254 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 FAM53AQ6NSI3 398 aaPredicted RBP3.52□□□□□ -1.85
HMGN1-218ENST00000490032 PLXDC2Q6UX71 529 aa3.52□□□□□ -1.85
HMGN1-218ENST00000490032 ZNF497Q6ZNH5 498 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms