RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CCDC134Q9H6E4 229 aa21.49■■□□□ 1.03
SMC4-221ENST00000489573 PCDHB1Q9Y5F3 818 aa21.49■■□□□ 1.03
SMC4-221ENST00000489573 AP1G1O43747 822 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 RHOBTB1O94844 696 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 ESR1P03372 595 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 GM2AP17900 193 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 RPS3P23396 243 aaKnown RBP eCLIP21.48■■□□□ 1.037e-64■■■■■ 337.8
SMC4-221ENST00000489573 ITIH4Q14624 930 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 CTSL3PQ5NE16 218 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 CYP2U1Q7Z449 544 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 TMPRSS6Q8IU80 811 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 ARMC2Q8NEN0 867 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 ZSCAN5AQ9BUG6 496 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 C1QTNF1Q9BXJ1 281 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 CLPBQ9H078 707 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 ABCG8Q9H221 673 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 POPDC3Q9HBV1 291 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 GPAMQ9HCL2 828 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 CD248Q9HCU0 757 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 SMOXQ9NWM0 555 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 CA14Q9ULX7 337 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 SORCS3Q9UPU3 1222 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 A0A1W2PP55 124 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 DNTTP04053 509 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 C6P13671 934 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 PRKCQQ04759 706 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 C16orf46Q6P387 395 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.48■■□□□ 1.03
SMC4-221ENST00000489573 TBC1D1Q86TI0 1168 aaPredicted RBP21.48■■□□□ 1.03
SMC4-221ENST00000489573 PIM3Q86V86 326 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 KCTD4Q8WVF5 259 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 RIOK2Q9BVS4 552 aaKnown RBP21.48■■□□□ 1.03
SMC4-221ENST00000489573 ARHGEF3Q9NR81 526 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 ZNF358Q9NW07 568 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 ZDHHC3Q9NYG2 299 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 TMEM216Q9P0N5 145 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 SERGEFQ9UGK8 458 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 EMCNQ9ULC0 261 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 MMP17Q9ULZ9 603 aa21.48■■□□□ 1.03
SMC4-221ENST00000489573 PLXNA2O75051 1894 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 LZTS3O60299 673 aaPredicted RBP21.47■■□□□ 1.03
SMC4-221ENST00000489573 PLIN3O60664 434 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 MMP20O60882 483 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 RNASEH2AO75792 299 aaKnown RBP21.47■■□□□ 1.03
SMC4-221ENST00000489573 WISP3O95389 354 aaPredicted RBP21.47■■□□□ 1.03
SMC4-221ENST00000489573 SERPINB4P48594 390 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 TIAL1Q01085 375 aaKnown RBP eCLIP21.47■■□□□ 1.03
SMC4-221ENST00000489573 CREB5Q02930 508 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 CCDC153Q494R4 210 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 ZNF765Q7L2R6 523 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 CENPLQ8N0S6 344 aaPredicted RBP21.47■■□□□ 1.03
SMC4-221ENST00000489573 AP2M1Q96CW1 435 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 NUS1Q96E22 293 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 COPS8Q99627 209 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 BOCQ9BWV1 1114 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 TAS2R13Q9NYV9 303 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 GNPTGQ9UJJ9 305 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 COQ6Q9Y2Z9 468 aa21.47■■□□□ 1.03
SMC4-221ENST00000489573 SPTBN5Q9NRC6 3674 aaKnown RBP21.47■■□□□ 1.03
SMC4-221ENST00000489573 SRRM3A6NNA2 597 aaPredicted RBP21.46■■□□□ 1.03
SMC4-221ENST00000489573 TSPAN6O43657 245 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 VPS26AO75436 327 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 RECQL5O94762 991 aaPredicted RBP21.46■■□□□ 1.03
SMC4-221ENST00000489573 KLHL2O95198 593 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 PROCP04070 461 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 CD9P21926 228 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 TAS2R38P59533 333 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 PDAP1Q13442 181 aaKnown RBP21.46■■□□□ 1.03
SMC4-221ENST00000489573 TSNAXIP1Q2TAA8 658 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 KCNJ9Q92806 393 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 MAGEB18Q96M61 343 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 SLC6A17Q9H1V8 727 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 TMPRSS11EQ9UL52 423 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 SCML1Q9UN30 329 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 MED16Q9Y2X0 877 aa21.46■■□□□ 1.03
SMC4-221ENST00000489573 DNAJC6O75061 913 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 NIPSNAP2O75323 286 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 PYGLP06737 847 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 SLC26A3P40879 764 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 KPNA2P52292 529 aaKnown RBP21.45■■□□□ 1.02
SMC4-221ENST00000489573 ZBTB16Q05516 673 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 TERF2Q15554 542 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 PDK4Q16654 411 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 TTC31Q49AM3 519 aaPredicted RBP21.45■■□□□ 1.02
SMC4-221ENST00000489573 GPRC6AQ5T6X5 926 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 PTRHD1Q6GMV3 140 aaKnown RBP21.45■■□□□ 1.02
SMC4-221ENST00000489573 CCDC63Q8NA47 563 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 GANCQ8TET4 914 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 FAM131CQ96AQ9 280 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 CCDC97Q96F63 343 aaPredicted RBP21.45■■□□□ 1.02
SMC4-221ENST00000489573 FBXL12Q9NXK8 326 aa21.45■■□□□ 1.02
SMC4-221ENST00000489573 RUVBL2Q9Y230 463 aaKnown RBP21.45■■□□□ 1.02
SMC4-221ENST00000489573 IGLV3-16A0A075B6K0 115 aa21.44■■□□□ 1.02
SMC4-221ENST00000489573 FADS2P1A8MWK0 482 aa21.44■■□□□ 1.02
SMC4-221ENST00000489573 H3BMM5 538 aa21.44■■□□□ 1.02
SMC4-221ENST00000489573 LTA4HP09960 611 aaKnown RBP21.44■■□□□ 1.02
SMC4-221ENST00000489573 C7P10643 843 aa21.44■■□□□ 1.02
SMC4-221ENST00000489573 NSG1P42857 185 aa21.44■■□□□ 1.02
SMC4-221ENST00000489573 IRX4P78413 519 aa21.44■■□□□ 1.02
SMC4-221ENST00000489573 DLG1Q12959 904 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms