RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 DENND5BQ6ZUT9 1274 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SMIM5Q71RC9 77 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SLC35F3Q8IY50 421 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 PARP16Q8N5Y8 322 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SYT2Q8N9I0 419 aaPredicted RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ZBTB8BQ8NAP8 495 aaPredicted RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 OR14L1PQ8NHC6 308 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 HUS1BQ8NHY5 278 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ATP6V1E2Q96A05 226 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 EME1Q96AY2 570 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 FBXL8Q96CD0 374 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 CLMNQ96JQ2 1002 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 GAD1Q99259 594 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 TMEM47Q9BQJ4 181 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SH2D3AQ9BRG2 576 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 LRRCC1Q9C099 1032 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 CDT1Q9H211 546 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 HRH4Q9H3N8 390 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 MVB12BQ9H7P6 319 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SLC28A3Q9HAS3 691 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 PNRC2Q9NPJ4 139 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 PDGFCQ9NRA1 345 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 PAPOLBQ9NRJ5 636 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ARHGEF38Q9NXL2 777 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 KLHL13Q9P2N7 655 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SEL1LQ9UBV2 794 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SEC63Q9UGP8 760 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 NDRG3Q9UGV2 375 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 PPIEQ9UNP9 301 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 EXOC6BQ9Y2D4 811 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 MAU2Q9Y6X3 613 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 UBN2Q6ZU65 1347 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SH3TC1Q8TE82 1336 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 USP42Q9H9J4 1324 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ANKRD36CQ5JPF3 1778 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 RGPD3A6NKT7 1758 aaPredicted RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 BCORQ6W2J9 1755 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 RGPD4Q7Z3J3 1758 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 UBR3Q6ZT12 1888 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 KIR2DS5A0A0G2JLQ3 304 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 A0A0U1RQF3 1178 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 GLOD5A6NK44 160 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 F8W810 466 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 KIR2DS3K7RE56 304 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 KLK8O60259 260 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 CSPG5O95196 566 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 PON1P27169 355 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 HOXA13P31271 388 aaPredicted RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 TNFSF8P32971 234 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 LIG4P49917 911 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 TFF2Q03403 129 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ACSM2AQ08AH3 577 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 NAE1Q13564 534 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SHBQ15464 509 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 EZH2Q15910 746 aaKnown RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SOWAHAQ2M3V2 549 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 CCDC57Q2TAC2 916 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SGO1Q5FBB7 561 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 C6orf141Q5SZD1 244 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ERMARDQ5T6L9 678 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ACSM2BQ68CK6 577 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 PMS2CLQ68D20 193 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 CFAP77Q6ZQR2 320 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SEPT14Q6ZU15 432 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 KDELC2Q7Z4H8 507 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ADGRA1Q86SQ6 560 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 AACSQ86V21 672 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ERC1Q8IUD2 1116 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 FAM217AQ8IXS0 508 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ZBTB2Q8N680 514 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 HJURPQ8NCD3 748 aaPredicted RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 MCPH1Q8NEM0 835 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 WIPF2Q8TF74 440 aaPredicted RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 VOPP1Q96AW1 172 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 PGAP3Q96FM1 320 aaPredicted RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 CCDC34Q96HJ3 373 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SPATA17Q96L03 361 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 ZNF570Q96NI8 536 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 NYXQ9GZU5 481 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SPAG4Q9NPE6 437 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 SEMA4GQ9NTN9 838 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 TMEM45AQ9NWC5 275 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 MARCH4Q9P2E8 410 aaPredicted RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 PADI1Q9ULC6 663 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 PA2G4Q9UQ80 394 aaKnown RBP4.1□□□□□ -1.75
PTCD3-216ENST00000487043 TRPV2Q9Y5S1 764 aa4.1□□□□□ -1.75
PTCD3-216ENST00000487043 TNS1Q9HBL0 1735 aaKnown RBP4.09□□□□□ -1.75
PTCD3-216ENST00000487043 C1orf226A1L170 272 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 LRRC72A6NJI9 287 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 ADAMDEC1O15204 470 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 PRPF4O43172 522 aaKnown RBP eCLIP4.09□□□□□ -1.75
PTCD3-216ENST00000487043 MITFO75030 526 aaPredicted RBP4.09□□□□□ -1.75
PTCD3-216ENST00000487043 TBX10O75333 385 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 GPC4O75487 556 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 CIAO1O76071 339 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 RGS11O94810 467 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 GGPS1O95749 300 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 NUDT3O95989 172 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 CBSLP0DN79 551 aa4.09□□□□□ -1.75
PTCD3-216ENST00000487043 AGAP20933 346 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms