RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MCCC1Q96RQ3 725 aaPredicted RBP7.99□□□□□ -1.13
USP40-216ENST00000485943 OSBPL9Q96SU4 736 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 INSM2Q96T92 566 aaPredicted RBP7.99□□□□□ -1.13
USP40-216ENST00000485943 AP1M1Q9BXS5 423 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 ABCG8Q9H221 673 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 VPS37BQ9H9H4 285 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 NLGN3Q9NZ94 848 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 AKAP7Q9P0M2 348 aaPredicted RBP7.99□□□□□ -1.13
USP40-216ENST00000485943 ASIC3Q9UHC3 531 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 SAR1BQ9Y6B6 198 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 CSNK1G3Q9Y6M4 447 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 CABIN1Q9Y6J0 2220 aa7.99□□□□□ -1.13
USP40-216ENST00000485943 RHPN2P1A8MT19 583 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 NDC80O14777 642 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 TNFRSF10CO14798 259 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 FZD6O60353 706 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 SNX2O60749 519 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 USP12O75317 370 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 GCATO75600 419 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CDK14O94921 469 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 ECEL1O95672 775 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 ATP1A1P05023 1023 aaKnown RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 MMP2P08253 660 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 C1SP09871 688 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 FTH1P19P0C7X4 201 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CD59P13987 128 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CKMT2P17540 419 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 LHCGRP22888 699 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CD68P34810 354 aaPredicted RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 ACTR1BP42025 376 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 HALP42357 657 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 ACTR1AP61163 376 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 E2F1Q01094 437 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 PTSQ03393 145 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 DPTQ07507 201 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 POU6F1Q14863 301 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 TAF1AQ15573 450 aaPredicted RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 SKIDA1Q1XH10 827 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 LDLRAP1Q5SW96 308 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 PDPK2PQ6A1A2 396 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CCDC137Q6PK04 289 aaKnown RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 SLC30A9Q6PML9 568 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CRTC3Q6UUV7 619 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 FAM151BQ6UXP7 276 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 CHST15Q7LFX5 561 aaPredicted RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 RAVER1Q8IY67 606 aaKnown RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 RBFAQ8N0V3 343 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 SLC22A18ASQ8N1D0 253 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 LINC00528Q8N1L1 170 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 TRAM1L1Q8N609 369 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 OR4C6Q8NH72 309 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 MAPK15Q8TD08 544 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 SAP25Q8TEE9 199 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 SCAMP4Q969E2 229 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 FUBP1Q96AE4 644 aaKnown RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 ULK4Q96C45 1275 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 KLF6Q99612 283 aaPredicted RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 ORAI3Q9BRQ5 295 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 TLR10Q9BXR5 811 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 ASB8Q9H765 288 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 USP29Q9HBJ7 922 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 BFARQ9NZS9 450 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 ANGPTL2Q9UKU9 493 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 PCOLCE2Q9UKZ9 415 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 TTC7AQ9ULT0 858 aaPredicted RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 SUFUQ9UMX1 484 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 R3HDM2Q9Y2K5 976 aaKnown RBP7.98□□□□□ -1.13
USP40-216ENST00000485943 TMEM98Q9Y2Y6 226 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 PPIL1Q9Y3C6 166 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 PCDH15Q96QU1 1955 aa7.98□□□□□ -1.13
USP40-216ENST00000485943 A0A0U1RQS6 177 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 TCRBV7S2A1N4TA0A589 114 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 HEATR9A2RTY3 570 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PDZK1P1A8MUH7 402 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 K7ESM1 405 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 TPP1O14773 563 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 CAPN5O15484 640 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 SIGLEC6O43699 453 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 BUD23O43709 281 aaKnown RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 PRAMEF1O95521 474 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 AP2A1O95782 977 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 KRT14P02533 472 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 HOXC4P09017 264 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 PAMP19021 973 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PMLP29590 882 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PBLDP30039 288 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 HMGCLP35914 325 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 ADCY8P40145 1251 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 CHRNA4P43681 627 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 SESN2P58004 480 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 DCDC1P59894 354 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 BNC1Q01954 994 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 GPS1Q13098 491 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 EIF2B5Q13144 721 aaKnown RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 KLF1Q13351 362 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 LRP8Q14114 963 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 TRIP13Q15645 432 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 CDKN3Q16667 212 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 ALG11Q2TAA5 492 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PLA2G4EQ3MJ16 856 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms