RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 A6NCN8 305 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 FADS2P1A8MWK0 482 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 B4E171 279 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 C9orf172C9J069 976 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 AKR1B15C9JRZ8 316 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 SPOPO43791 374 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 NDST3O95803 873 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 PRB1P04280 392 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 F3P13726 295 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 CSTF2P33240 577 aaKnown RBP eCLIP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ETV5P41161 510 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 TSPAN7P41732 249 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ATP1A2P50993 1020 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 MAPK10P53779 464 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 CDK18Q07002 472 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 PRKD1Q15139 912 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 TAZQ16635 292 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 MANEAQ5SRI9 462 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZDHHC20Q5W0Z9 365 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 CCDC70Q6NSX1 233 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZNF574Q6ZN55 896 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 MARK2Q7KZI7 788 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 LYSMD3Q7Z3D4 306 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 TMC3Q7Z5M5 1100 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZNF605Q86T29 641 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 RFX6Q8HWS3 928 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZSCAN1Q8NBB4 408 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 USP7Q93009 1102 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 MED8Q96G25 268 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 CALR3Q96L12 384 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 PLEKHG4BQ96PX9 1271 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 VPS35Q96QK1 796 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 SMIM14Q96QK8 99 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 TRABDQ9H4I3 376 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 UCK1Q9HA47 277 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 TRIM39Q9HCM9 518 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 LUC7LQ9NQ29 371 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZNHIT2Q9UHR6 403 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZNF711Q9Y462 761 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ADGRG1Q9Y653 693 aa12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 OAS3Q9Y6K5 1087 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 ZNF106Q9H2Y7 1883 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 LILRA5A6NI73 299 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 CHUKO15111 745 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 EFSO43281 561 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 GRID2O43424 1007 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 VEGFDO43915 354 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 SLC25A14O95258 325 aaPredicted RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 LCA5LO95447 670 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 EPOP01588 193 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 ATP1A1P05023 1023 aaKnown RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 CSF2RBP32927 897 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 HMGCLP35914 325 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 CDKN2BP42772 138 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 TNNT3P45378 269 aaPredicted RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 TBX2Q13207 712 aaPredicted RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 GALNT3Q14435 633 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 TFDP3Q5H9I0 405 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 IYDQ6PHW0 289 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 SARM1Q6SZW1 724 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 USP53Q70EK8 1073 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 CHST15Q7LFX5 561 aaPredicted RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 TFB1MQ8WVM0 346 aaKnown RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 GLYATL1Q969I3 302 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 TEKT5Q96M29 485 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 AGAP3Q96P47 875 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 ZPBPQ9BS86 351 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 TIMM29Q9BSF4 260 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 SPATA16Q9BXB7 569 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 ZMYND15Q9H091 742 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 GLOD4Q9HC38 313 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 HACD3Q9P035 362 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 FOXJ2Q9P0K8 574 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 PLEKHM1Q9Y4G2 1056 aa12□□□□□ -0.49
SQSTM1-207ENST00000481335 TLN1Q9Y490 2541 aaKnown RBP12□□□□□ -0.49
SQSTM1-207ENST00000481335 HACD1B0YJ81 288 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 KMOO15229 486 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 KCNJ13O60928 360 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 PPFIA2O75334 1257 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 FGF3P11487 239 aaPredicted RBP11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 SFTPCP11686 197 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 ACP5P13686 325 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 COMTP21964 271 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 PTPN3P26045 913 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 MFSD7Q6UXD7 560 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 RBM12BQ8IXT5 1001 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 CCDC170Q8IYT3 715 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 KATNAL2Q8IYT4 538 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 RCBTB1Q8NDN9 531 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 GPR26Q8NDV2 337 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 LRRN4Q8WUT4 740 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 P3H4Q92791 437 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 RNF25Q96BH1 459 aaPredicted RBP11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 EID2BQ96D98 161 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 RBM41Q96IZ5 413 aaKnown RBP11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 GPR63Q9BZJ6 419 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 ATXN10Q9UBB4 475 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 TBC1D29Q9UFV1 150 aa11.99□□□□□ -0.49
SQSTM1-207ENST00000481335 FAM153AQ9UHL3 310 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms