RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ART5Q96L15 291 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 NEUROD6Q96NK8 337 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 SIN3AQ96ST3 1273 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 MXRA8Q9BRK3 442 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 POLR3CQ9BUI4 534 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 WDR13Q9H1Z4 485 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 TFB2MQ9H5Q4 396 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 CCDC177Q9NQR7 707 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 SMYD2Q9NRG4 433 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 PCDHB16Q9NRJ7 776 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 BLOC1S4Q9NUP1 217 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 TAS2R10Q9NYW0 307 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 KCND2Q9NZV8 630 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 SARDHQ9UL12 918 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 TAF1P21675 1872 aa3.04□□□□□ -1.92
CCDC88A-212ENST00000474059 A0A1W2PQM1 296 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 F5H0A9 414 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 TGFB1I1O43294 461 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 AGAP20933 346 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 POU1F1P28069 291 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 HOXC8P31273 242 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 RGS2P41220 211 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 HARS2P49590 506 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 RAD23BP54727 409 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 DCAF7P61962 342 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 RPL24P83731 157 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 RUNX1T1Q06455 604 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 VEPH1Q14D04 833 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 SFMBT2Q5VUG0 894 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 HIST2H2BDQ6DRA6 164 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 TMEM81Q6P7N7 255 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 SLC36A4Q6YBV0 504 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 C4orf50Q6ZRC1 276 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 STXBP4Q6ZWJ1 553 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 TMTC3Q6ZXV5 915 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 DIS3L2Q8IYB7 885 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 ZNF440Q8IYI8 595 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 STPG4Q8N801 248 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 ANKRD52Q8NB46 1076 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 METTL6Q8TCB7 284 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 TM9SF4Q92544 642 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 KLHL29Q96CT2 875 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 SENP5Q96HI0 755 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 NR1H4Q96RI1 486 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 CHCHD6Q9BRQ6 235 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 HEMGNQ9BXL5 484 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 PDCL3Q9H2J4 239 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 OGFRQ9NZT2 677 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 CARD8Q9Y2G2 431 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 ADAMTS9Q9P2N4 1935 aa3.03□□□□□ -1.92
CCDC88A-212ENST00000474059 TDRD9Q8NDG6 1382 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TEX13CA0A0J9YWL9 993 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 GOLGA6L9A6NEM1 432 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 PGPEP1LA6NFU8 196 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 HMGB1P1B2RPK0 211 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 WDR1O75083 606 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TACC1O75410 805 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 CAVIN2O95810 425 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 GALTP07902 379 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 DDX5P17844 614 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 ABCD1P33897 745 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 CASP2P42575 452 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 MMP14P50281 582 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 SPOCK1Q08629 439 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 GRIK3Q13003 919 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 GTF2H2Q13888 395 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TMEM187Q14656 261 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TBCEQ15813 527 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 CCDC96Q2M329 555 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 SLC45A4Q5BKX6 768 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 GTF2H2CQ6P1K8 395 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 RAD9BQ6WBX8 426 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TAOK1Q7L7X3 1001 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TADA2BQ86TJ2 420 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 TRPT1Q86TN4 253 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 FAM160B2Q86V87 743 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 CNTROBQ8N137 903 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 SCRN2Q96FV2 425 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 POM121L2Q96KW2 1035 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 KLHL15Q96M94 604 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 CMKLR1Q99788 373 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 OPRPNQ99935 248 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 UBXN6Q9BZV1 441 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 BABAM1Q9NWV8 329 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 MPP6Q9NZW5 540 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 KIAA1456Q9P272 454 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 HSPB7Q9UBY9 170 aa3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 FBXO9Q9UK97 447 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-212ENST00000474059 AGRNO00468 2067 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 A0A0J9YWU9 116 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 PI4KAP2A4QPH2 592 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 NPIPB15A6NHN6 443 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 IFNL4K9M1U5 179 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 LDLRAD4O15165 306 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 RNASEH2AO75792 299 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 SORBS2O94875 1100 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 CLEC3BP05452 202 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 ETFAP13804 333 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 MAOAP21397 527 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 BDNFP23560 247 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms