RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CREMQ03060 361 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 CPSF6Q16630 551 aaKnown RBP eCLIP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 CCDC157Q569K6 752 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 CXXC5Q7LFL8 322 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 LSM1O15116 133 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 GALNT5Q7Z7M9 940 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 RALGPS2Q86X27 583 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 PIH1D2Q8WWB5 315 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 DNAJC1Q96KC8 554 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 ABCC6O95255 1503 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 SSNA1O43805 119 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 NDUFS2O75306 463 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 PTX3P26022 381 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 NOGQ13253 232 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 DPYSL2Q16555 572 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 PDCD4Q53EL6 469 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 RBM48Q5RL73 367 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 FAM131AQ6UXB0 335 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 FAM156AQ8NDB6 213 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 CMASQ8NFW8 434 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 TEX47Q8TBZ9 253 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 SEC14L1Q92503 715 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 OXSMQ9NWU1 459 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 KDM4FA0A1W2PPD8 638 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 RBM47A0AV96 593 aaKnown RBP18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 MAPK9P45984 424 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 MERTKQ12866 999 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 SIM2Q14190 667 aaPredicted RBP18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 C5orf22Q49AR2 442 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 NADK2Q4G0N4 442 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 PLET1Q6UQ28 207 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 PDSS2Q86YH6 399 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 C7orf43Q8WVR3 580 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 FNDC11Q9BVV2 318 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 CMTM6Q9NX76 183 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 FZD10Q9ULW2 581 aa18.89■□□□□ 0.62
CCDC88B-204ENST00000463837 CYP3A5P20815 502 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 CCNFP41002 786 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 CTSKP43235 329 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 COPZ1P61923 177 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 SP3Q02447 781 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 STOML2Q9UJZ1 356 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 MATN3O15232 486 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 RAP2AP10114 183 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 EPORP19235 508 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 KIR3DL1P43629 444 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 TUBA4AP68366 448 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 KIAA0930Q6ICG6 404 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 TMEM199Q8N511 208 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 KLHL32Q96NJ5 620 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 FTHL17Q9BXU8 183 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 KAT8Q9H7Z6 458 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 RASSF1Q9NS23 344 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 RHOQP17081 205 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 ASMTP46597 345 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 CCNIQ14094 377 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 DEFB115Q30KQ5 88 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 IRAK1BP1Q5VVH5 260 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 ZDHHC20Q5W0Z9 365 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 CES5AQ6NT32 575 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 TRMT10BQ6PF06 316 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 CERS6Q6ZMG9 384 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 HEXDCQ8WVB3 486 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 ZNF558Q96NG5 402 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 GPR20Q99678 358 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 MAGEE1Q9HCI5 957 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 ZNF490Q9ULM2 529 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 CNOT6Q9ULM6 557 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 KCNE2Q9Y6J6 123 aa18.89■□□□□ 0.61
CCDC88B-204ENST00000463837 NDST3O95803 873 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 DHFRP00374 187 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 PRKAG1P54619 331 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 SLC9B1Q4ZJI4 515 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 PAOXQ6QHF9 649 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 ZZZ3Q8IYH5 903 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 CCDC185Q8N715 623 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 HJURPQ8NCD3 748 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 MRPL17Q9NRX2 175 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 DNAJB9Q9UBS3 223 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 MSRAQ9UJ68 235 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 PLOD3O60568 738 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 KCNJ11Q14654 390 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 TSTD2Q5T7W7 516 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 CPTPQ5TA50 214 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 CLEC6AQ6EIG7 209 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 GLB1L3Q8NCI6 653 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 GPATCH1Q9BRR8 931 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 PTBP2Q9UKA9 531 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 PPM1HQ9ULR3 514 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 E7ENX8 843 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 SLC7A4O43246 635 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 SDC2P34741 201 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 SCNN1AP37088 669 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 YBEYP58557 167 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 TIFABQ6ZNK6 161 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 OR4A15Q8NGL6 344 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 BTN2A3PQ96KV6 586 aa18.88■□□□□ 0.61
CCDC88B-204ENST00000463837 ZNF99A8MXY4 864 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms