RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CRTC2Q53ET0 693 aaPredicted RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 TXNRD3NBQ6F5E7 133 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 CCDC70Q6NSX1 233 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 CYB5D1Q6P9G0 228 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 TRIM48Q8IWZ4 208 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 FAM71BQ8TC56 605 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 IQCDQ96DY2 449 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 NAP1L5Q96NT1 182 aaPredicted RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 UCK1Q9HA47 277 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 TRIM39Q9HCM9 518 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 KLHL3Q9UH77 587 aa13.15□□□□□ -0.3
HMGB3-204ENST00000448905 CNOT6Q9ULM6 557 aaKnown RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 TMEM184BQ9Y519 407 aaPredicted RBP13.15□□□□□ -0.3
HMGB3-204ENST00000448905 PIEZO2Q9H5I5 2752 aa13.15□□□□□ -0.31
HMGB3-204ENST00000448905 CHD5Q8TDI0 1954 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 A0A1B0GTH6 734 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 LOC101059948A0A1B0GTJ6 334 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 NUAK1O60285 661 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 EML2O95834 649 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 PRLP01236 227 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 VIPP01282 170 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 JCHAINP01591 159 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 CCNYL3P0C7X3 344 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 XRCC1P18887 633 aaPredicted RBP13.14□□□□□ -0.31
HMGB3-204ENST00000448905 CLCNKAP51800 687 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 UBAP2LQ14157 1087 aaKnown RBP13.14□□□□□ -0.31
HMGB3-204ENST00000448905 DPYSL3Q14195 570 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 MAP7Q14244 749 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 IL11RAQ14626 422 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 DEFB109BQ30KR1 87 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 C16orf46Q6P387 395 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 ALKBH5Q6P6C2 394 aaKnown RBP13.14□□□□□ -0.31
HMGB3-204ENST00000448905 UNC5BQ8IZJ1 945 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 ARRDC2Q8TBH0 407 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 ABHD17AQ96GS6 310 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 BTBD6Q96KE9 485 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 SMIM14Q96QK8 99 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 SRPK1Q96SB4 655 aaKnown RBP13.14□□□□□ -0.31
HMGB3-204ENST00000448905 ZNF670Q9BS34 389 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 SPATA16Q9BXB7 569 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 MAK16Q9BXY0 300 aaKnown RBP13.14□□□□□ -0.31
HMGB3-204ENST00000448905 ZFYVE1Q9HBF4 777 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 ZNF71Q9NQZ8 489 aaPredicted RBP13.14□□□□□ -0.31
HMGB3-204ENST00000448905 KCTD3Q9Y597 815 aa13.14□□□□□ -0.31
HMGB3-204ENST00000448905 SCN8AQ9UQD0 1980 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 A0A1W2PQJ5 194 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 KMOO15229 486 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 MFSD11O43934 449 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 MTA2O94776 668 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 UBXN7O94888 489 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 CD48P09326 243 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 ANKRD34CP0C6C1 535 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 ZBED6P86452 979 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 CDC20Q12834 499 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 SKIDA1Q1XH10 827 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 HENMT1Q5T8I9 393 aaKnown RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 E4F1Q66K89 784 aaPredicted RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 NCBP2-AS2Q69YL0 99 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 PDPK2PQ6A1A2 396 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 C6orf15Q6UXA7 325 aaPredicted RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 TIPARPQ7Z3E1 657 aaKnown RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 CCDC13Q8IYE1 715 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 STARD8Q92502 1023 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 ZDHHC12Q96GR4 267 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 C9orf72Q96LT7 481 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 ZSCAN5AQ9BUG6 496 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 ULBP3Q9BZM4 244 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 XPO4Q9C0E2 1151 aaKnown RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 OSGEPL1Q9H4B0 414 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 PRDM8Q9NQV8 689 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 KLC4Q9NSK0 619 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 ATXN10Q9UBB4 475 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 KCND3Q9UK17 655 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 LUC7L2Q9Y383 392 aaKnown RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 OAS3Q9Y6K5 1087 aaKnown RBP13.13□□□□□ -0.31
HMGB3-204ENST00000448905 RPS6KL1Q9Y6S9 549 aa13.13□□□□□ -0.31
HMGB3-204ENST00000448905 LILRA5A6NI73 299 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 MKRN2OSH3BPM6 223 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 VEGFDO43915 354 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 RASSF9O75901 435 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 MT-ND3P03897 115 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 NTRK1P04629 796 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 ZNF8P17098 575 aaPredicted RBP13.12□□□□□ -0.31
HMGB3-204ENST00000448905 VCLP18206 1134 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 GJC1P36383 396 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 CD86P42081 329 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 ARSEP51690 589 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 NIPAL4Q0D2K0 466 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 QPCTQ16769 361 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 INSCQ1MX18 579 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 ATP13A4Q4VNC1 1196 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 LACTB2Q53H82 288 aaPredicted RBP13.12□□□□□ -0.31
HMGB3-204ENST00000448905 ODF2Q5BJF6 829 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 ZNF569Q5MCW4 686 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 HGSNATQ68CP4 663 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 RASGRP3Q8IV61 690 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 RBM12BQ8IXT5 1001 aaKnown RBP13.12□□□□□ -0.31
HMGB3-204ENST00000448905 TEX19Q8NA77 164 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 CPLX3Q8WVH0 158 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 TTC25Q96NG3 672 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms