RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 UNC5BQ8IZJ1 945 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 HMGB4Q8WW32 186 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 DNAJC9Q8WXX5 260 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RERGQ96A58 199 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 VPS33AQ96AX1 596 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SIPA1Q96FS4 1042 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 KXD1Q9BQD3 176 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 C1orf50Q9BV19 199 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ATG10Q9H0Y0 220 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 DNAJC11Q9NVH1 559 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 FETUBQ9UGM5 382 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 CIDEBQ9UHD4 219 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ITM2BQ9Y287 266 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TK2O00142 265 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PDE5AO76074 875 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SNRPB2P08579 225 aaKnown RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 EN2P19622 333 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TLX1P31314 330 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SPIDRQ14159 915 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ITPRIPL2Q3MIP1 535 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 GPR33Q49SQ1 333 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 FBXO48Q5FWF7 155 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ATAD3BQ5T9A4 648 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 CHST15Q7LFX5 561 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 EFCAB3Q8N7B9 438 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RIN3Q8TB24 985 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 NUS1Q96E22 293 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TSGA13Q96PP4 275 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PCDH12Q9NPG4 1184 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ATAD3AQ9NVI7 634 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 HCSTQ9UBK5 93 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 GULP1Q9UBP9 304 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TRAFD1O14545 582 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 DCLK1O15075 740 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PLIN3O60664 434 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 EPN2O95208 641 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 VIPP01282 170 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ALBP02768 609 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ME2P23368 584 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 VHLP40337 213 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 HSPA7P48741 367 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SCAPQ12770 1279 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 ILF3Q12906 894 aaKnown RBP eCLIP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 SF1Q15637 639 aaKnown RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 RALGPS1Q5JS13 557 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TAS1R1Q7RTX1 841 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 TMPRSS11BQ86T26 416 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 DHFR2Q86XF0 187 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 UMODL1-AS1Q8N2C9 162 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 OR9Q1Q8NGQ5 310 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 FEM1AQ9BSK4 669 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 DCLRE1BQ9H816 532 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 NUDT4Q9NZJ9 180 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 PSMD13Q9UNM6 376 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 FAF1Q9UNN5 650 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-213ENST00000448038 MAPRE3Q9UPY8 281 aa7.36□□□□□ -1.23
SYNE1-213ENST00000448038 IQCF5A8MTL0 148 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 FPGTO14772 594 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SCAMP1O15126 338 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 KCNH1O95259 989 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CLDN7O95471 211 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 NTSP30990 170 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PEX19P40855 299 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 INPP1P49441 399 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 VAC14Q08AM6 782 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SAMD4BQ5PRF9 694 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PM20D1Q6GTS8 502 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 FOXR1Q6PIV2 292 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ALKAL1Q6UXT8 129 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TCEAL8Q8IYN2 117 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 FSTL5Q8N475 847 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 COL26A1Q96A83 441 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 CEP295NLQ96MC4 621 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SEPHS2Q99611 448 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 RIOK2Q9BVS4 552 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 OR2AG1Q9H205 316 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 GOLGA4Q13439 2230 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 MYH15Q9Y2K3 1946 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 URADA6NGE7 173 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 AGPSO00116 658 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ZMPSTE24O75844 475 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 DLDP09622 509 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 HLA-EP13747 358 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ATP6V1B2P21281 511 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 AKT2P31751 481 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 KRT20P35900 424 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PKNOX1P55347 436 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 RGS1Q08116 209 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF252P-AS1Q0IIN9 211 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 LMAN2Q12907 356 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 PRKG2Q13237 762 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TSNQ15631 228 aaKnown RBP7.35□□□□□ -1.23
SYNE1-213ENST00000448038 MSS51Q4VC12 460 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 WLSQ5T9L3 541 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TAF8Q7Z7C8 310 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TSTD1Q8NFU3 115 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TBCDQ9BTW9 1192 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 FAIM2Q9BWQ8 316 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 SLC2A6Q9UGQ3 507 aa7.35□□□□□ -1.23
SYNE1-213ENST00000448038 TMCC3Q9ULS5 477 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms