RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 CACNA2D3Q8IZS8 1091 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 PELI3Q8N2H9 469 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 PGBD5Q8N414 524 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 TMEM151AQ8N4L1 468 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 NIPA2Q8N8Q9 360 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 CCNYQ8ND76 341 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 LPCAT1Q8NF37 534 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 EXD1Q8NHP7 514 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 CCHCR1Q8TD31 782 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 PATE1Q8WXA2 126 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 SH3KBP1Q96B97 665 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 IQCDQ96DY2 449 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 ABHD17AQ96GS6 310 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 TEFMQ96QE5 360 aaKnown RBP7.71□□□□□ -1.18
VPS50-204ENST00000438395 RIOK2Q9BVS4 552 aaKnown RBP7.71□□□□□ -1.18
VPS50-204ENST00000438395 DDA1Q9BW61 102 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 ADGRE3Q9BY15 652 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 THAP2Q9H0W7 228 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 ISCUQ9H1K1 167 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 ABCG8Q9H221 673 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 HSD3B7Q9H2F3 369 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 RBM22Q9NW64 420 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS50-204ENST00000438395 LCMT1Q9UIC8 334 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 RPL26L1Q9UNX3 145 aaKnown RBP7.71□□□□□ -1.18
VPS50-204ENST00000438395 PCDHGA11Q9Y5H2 935 aa7.71□□□□□ -1.18
VPS50-204ENST00000438395 IGHV1OR21-1A0A087WYE8 117 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 A0A0J9YYE9 177 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 C1orf232A0A0U1RR37 186 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 EFCAB7A8K855 629 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 ZNF891A8MT65 544 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 GOLGA6L19H0YKK7 550 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 SNX2O60749 519 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 MTA2O94776 668 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 MAP3K6O95382 1288 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 PEX11BO96011 259 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 TRBC1P01850 177 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 SLC4A1P02730 911 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 SERPING1P05155 500 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 KRT7P08729 469 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 ACP5P13686 325 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 TCF4P15884 667 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 MPSTP25325 297 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 TNNT3P45378 269 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 CSRP3P50461 194 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 STC1P52823 247 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 LIMK2P53671 638 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 DSC2Q02487 901 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 HHEXQ03014 270 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 SRSF6Q13247 344 aaKnown RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 NFATC2Q13469 925 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 NR1D2Q14995 579 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 TBR1Q16650 682 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 ANKRD20A8PQ5CZ79 823 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 FIGNQ5HY92 759 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 ZNF569Q5MCW4 686 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 CAVIN1Q6NZI2 390 aaKnown RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 BORAQ6PGQ7 559 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 TMPRSS9Q7Z410 1059 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 KDELC2Q7Z4H8 507 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 C17orf82Q86X59 251 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 ZNF761Q86XN6 746 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 TRIM48Q8IWZ4 208 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 NAGSQ8N159 534 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 ZNF564Q8TBZ8 553 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 SLC37A2Q8TED4 501 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 PIH1D2Q8WWB5 315 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 CTNNBL1Q8WYA6 563 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 SYN2Q92777 582 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 SCAMP4Q969E2 229 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 ZNF670Q9BS34 389 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 HERPUD2Q9BSE4 406 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 EFHD1Q9BUP0 239 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 TRIM4Q9C037 500 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 OSGEPL1Q9H4B0 414 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 EPB41L1Q9H4G0 881 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 GPN2Q9H9Y4 310 aaPredicted RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 PKD2L2Q9NZM6 624 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 VPS18Q9P253 973 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 CTTNBP2NLQ9P2B4 639 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 AMACRQ9UHK6 382 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 CHKBQ9Y259 395 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 LUC7L2Q9Y383 392 aaKnown RBP7.7□□□□□ -1.18
VPS50-204ENST00000438395 PCDHGA3Q9Y5H0 932 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 BOD1L1Q8NFC6 3051 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 KIF26BQ2KJY2 2108 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 UNC13CQ8NB66 2214 aa7.7□□□□□ -1.18
VPS50-204ENST00000438395 RP1L1Q8IWN7 2480 aaPredicted RBP7.69□□□□□ -1.18
VPS50-204ENST00000438395 TRBV23OR9-2A0A075B6M9 112 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 KIR2DS5A0A0G2JLQ3 304 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 A0A0G2JNG1 304 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 A0A1W2PQJ5 194 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 A8MU76 341 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 B4E171 279 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 KIR2DS3K7RE56 304 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 MATN3O15232 486 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 PPM1DO15297 605 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 RAD1O60671 282 aa7.69□□□□□ -1.18
VPS50-204ENST00000438395 ATP1A1P05023 1023 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms