RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ZNF398Q8TD17 642 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 DUSP19Q8WTR2 217 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 NEU4Q8WWR8 484 aaPredicted RBP4.18□□□□□ -1.74
HMGB3-203ENST00000430118 BADQ92934 168 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 CAVIN3Q969G5 261 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 OTULINQ96BN8 352 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 ZNF503Q96F45 646 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 PGAP3Q96FM1 320 aaPredicted RBP4.18□□□□□ -1.74
HMGB3-203ENST00000430118 VMP1Q96GC9 406 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 ACTR5Q9H9F9 607 aaPredicted RBP4.18□□□□□ -1.74
HMGB3-203ENST00000430118 MED4Q9NPJ6 270 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 RNF146Q9NTX7 359 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.18□□□□□ -1.74
HMGB3-203ENST00000430118 DONSONQ9NYP3 566 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 WSB2Q9NYS7 404 aaPredicted RBP4.18□□□□□ -1.74
HMGB3-203ENST00000430118 PLK2Q9NYY3 685 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 NLKQ9UBE8 527 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 IPO11Q9UI26 975 aaKnown RBP4.18□□□□□ -1.74
HMGB3-203ENST00000430118 COG5Q9UP83 839 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 DOCK2Q92608 1830 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 MROH7Q68CQ1 1323 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 DOCK1Q14185 1865 aa4.18□□□□□ -1.74
HMGB3-203ENST00000430118 COL4A3Q01955 1670 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 A0A096LPK6 155 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TCRBV7S3A2A0A539 114 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TCRBV21S2A2A0A5A6 115 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 C17orf102A2RUQ5 167 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 NPIPB11E5RHQ5 1161 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SMIM22K7EJ46 135 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CHL1O00533 1208 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CTDSP2O14595 271 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 ZNF202O95125 648 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 AFPP02771 609 aaKnown RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 KRT10P13645 584 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SELLP14151 372 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 MAKP20794 623 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CD72P21854 359 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SP100P23497 879 aaPredicted RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 MSNP26038 577 aaKnown RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PON1P27169 355 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 EPHB2P29323 1055 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 RYKP34925 604 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TMPOP42166 694 aaKnown RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CAPZA2P47755 286 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CAMPP49913 170 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 LIG4P49917 911 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 STAT2P52630 851 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PMS2P54278 862 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 MFAP4P55083 255 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 F2RL1P55085 397 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 HMGN5P82970 282 aaKnown RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PLP2Q04941 152 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SLC18A2Q05940 514 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 ACSM2AQ08AH3 577 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TCP10Q12799 353 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TRDNQ13061 729 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PPIGQ13427 754 aaKnown RBP eCLIP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 GCKRQ14397 625 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 DRAP1Q14919 205 aaPredicted RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PPP2R5BQ15173 497 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CDSNQ15517 529 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CDC37Q16543 378 aaPredicted RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 ALG11Q2TAA5 492 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 USP41Q3LFD5 358 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 ACSM2BQ68CK6 577 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PMS2CLQ68D20 193 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 ADALQ6DHV7 355 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 MOB3CQ70IA8 216 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CHST3Q7LGC8 479 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 GALNTL5Q7Z4T8 443 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TFAP2DQ7Z6R9 452 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PALM2Q8IXS6 379 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 FAM185AQ8N0U4 392 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 MINDY1Q8N5J2 469 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 IL17RCQ8NAC3 791 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 GABPB2Q8TAK5 448 aaPredicted RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 REPS1Q96D71 796 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 CFAP57Q96MR6 1250 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SLITRK1Q96PX8 696 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 OR2A14Q96R47 310 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 PRRX2Q99811 253 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 TUBB6Q9BUF5 446 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 KIFC3Q9BVG8 833 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 KRTAP3-1Q9BYR8 98 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 HIPK3Q9H422 1215 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SLC28A3Q9HAS3 691 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 GRPEL1Q9HAV7 217 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 SLC17A6Q9P2U8 582 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 ANAPC2Q9UJX6 822 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 FAM96BQ9Y3D0 163 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 EPN1Q9Y6I3 576 aaPredicted RBP4.17□□□□□ -1.74
HMGB3-203ENST00000430118 MROH5Q6ZUA9 1318 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 A0A1B0GUL6 1792 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 LOC285556D6RIA3 1793 aa4.17□□□□□ -1.74
HMGB3-203ENST00000430118 FRMPD3Q5JV73 1810 aa4.16□□□□□ -1.74
HMGB3-203ENST00000430118 RRHO14718 337 aa4.16□□□□□ -1.74
HMGB3-203ENST00000430118 PAPSS1O43252 624 aaPredicted RBP4.16□□□□□ -1.74
HMGB3-203ENST00000430118 SEC14L5O43304 696 aa4.16□□□□□ -1.74
HMGB3-203ENST00000430118 MITFO75030 526 aaPredicted RBP4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms