RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 NOP2P46087 812 aaKnown RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 RPL26P61254 145 aaKnown RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 AP1B1Q10567 949 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 ZBTB17Q13105 803 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 MESDQ14696 234 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 SEPT7Q16181 437 aaKnown RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 INSCQ1MX18 579 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 PTRH1Q86Y79 214 aaKnown RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 TRIM48Q8IWZ4 208 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 PQLC3Q8N755 202 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 KIAA1143Q96AT1 154 aaPredicted RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 SH3KBP1Q96B97 665 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 TSGA13Q96PP4 275 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 WDR24Q96S15 920 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 TBC1D10AQ9BXI6 508 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 SLC12A9Q9BXP2 914 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 ADGRE3Q9BY15 652 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 BRD8Q9H0E9 1235 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 OR2AG1Q9H205 316 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 GPN2Q9H9Y4 310 aaPredicted RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 SARS2Q9NP81 518 aaKnown RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 DTLQ9NZJ0 730 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 IFNKQ9P0W0 207 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 UVRAGQ9P2Y5 699 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 RPL26L1Q9UNX3 145 aaKnown RBP14.36□□□□□ -0.11
SDC1-204ENST00000429035 SHOC2Q9UQ13 582 aa14.36□□□□□ -0.11
SDC1-204ENST00000429035 ZNF891A8MT65 544 aaPredicted RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 ARHGAP6O43182 974 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 KRT1P04264 644 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 H2AFZP0C0S5 128 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 F3P13726 295 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 ZNF8P17098 575 aaPredicted RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 ITGB6P18564 788 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 CASP14P31944 242 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 CSRP3P50461 194 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 POLE2P56282 527 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 SLC10A2Q12908 348 aaPredicted RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 ODF2Q5BJF6 829 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 CEACAM20Q6UY09 585 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 H2AFVQ71UI9 128 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 NLRP8Q86W28 1048 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 UNC5BQ8IZJ1 945 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 NLGN4XQ8N0W4 816 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 NLGN4YQ8NFZ3 816 aaPredicted RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 RAPGEF5Q92565 580 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 FAF2Q96CS3 445 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 RTP4Q96DX8 246 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 IQCDQ96DY2 449 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 TEFMQ96QE5 360 aaKnown RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 LYSMD1Q96S90 227 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 SLC25A18Q9H1K4 315 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 RMI1Q9H9A7 625 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 APMAPQ9HDC9 416 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 PRDM8Q9NQV8 689 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 KLC4Q9NSK0 619 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 ATXN10Q9UBB4 475 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 CNOT6Q9ULM6 557 aaKnown RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 DNAJC16Q9Y2G8 782 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 BSNQ9UPA5 3926 aa14.35□□□□□ -0.11
SDC1-204ENST00000429035 TLN1Q9Y490 2541 aaKnown RBP14.35□□□□□ -0.11
SDC1-204ENST00000429035 BOD1L1Q8NFC6 3051 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 KIR2DS5A0A0G2JLQ3 304 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 A0A0G2JNG1 304 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 PDZK1P1A8MUH7 402 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 ANKRD66B4E2M5 251 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 KIR2DS3K7RE56 304 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 APOL1O14791 398 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 NUAK1O60285 661 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 SLC25A14O95258 325 aaPredicted RBP14.34□□□□□ -0.11
SDC1-204ENST00000429035 MMP2P08253 660 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 TNNT1P13805 278 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 KDELR1P24390 212 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 GFERP55789 205 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 DYNLT1P63172 113 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 KCNAB2Q13303 367 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 SQSTM1Q13501 440 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 KIR2DS5Q14953 304 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 IYDQ6PHW0 289 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 B4GALNT4Q76KP1 1039 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 RFX6Q8HWS3 928 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 BMPERQ8N8U9 685 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 FATE1Q969F0 183 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 AGAP3Q96P47 875 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 RNF157Q96PX1 679 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 MAK16Q9BXY0 300 aaKnown RBP14.34□□□□□ -0.11
SDC1-204ENST00000429035 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.34□□□□□ -0.11
SDC1-204ENST00000429035 GPR63Q9BZJ6 419 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 CARD9Q9H257 536 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 ZFYVE1Q9HBF4 777 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 GEMIN8Q9NWZ8 242 aaKnown RBP14.34□□□□□ -0.11
SDC1-204ENST00000429035 CPNE7Q9UBL6 633 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 IL17BQ9UHF5 180 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 ZNF711Q9Y462 761 aa14.34□□□□□ -0.11
SDC1-204ENST00000429035 LOC101059948A0A1B0GTJ6 334 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 TERTO14746 1132 aaKnown RBP14.33□□□□□ -0.12
SDC1-204ENST00000429035 PPP1R12AO14974 1030 aaPredicted RBP14.33□□□□□ -0.12
SDC1-204ENST00000429035 MTX2O75431 263 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 STK17BO94768 372 aa14.33□□□□□ -0.12
SDC1-204ENST00000429035 VIPP01282 170 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms