RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 F8W8V4 182 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 GAPDHSO14556 408 aaPredicted RBP17■□□□□ 0.31
CCDC28B-202ENST00000421922 PRMT5O14744 637 aaPredicted RBP17■□□□□ 0.31
CCDC28B-202ENST00000421922 PRPF4O43172 522 aaKnown RBP eCLIP17■□□□□ 0.31
CCDC28B-202ENST00000421922 GPR39O43194 453 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 RFPL1O75677 317 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 RHOBTB1O94844 696 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 ALDOAP04075 364 aaKnown RBP17■□□□□ 0.31
CCDC28B-202ENST00000421922 PYGLP06737 847 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 CCT5P48643 541 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 RAB10P61026 200 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 ITIH4Q14624 930 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 ATP13A5Q4VNC0 1218 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 RBM20Q5T481 1227 aaKnown RBP17■□□□□ 0.31
CCDC28B-202ENST00000421922 HENMT1Q5T8I9 393 aaKnown RBP17■□□□□ 0.31
CCDC28B-202ENST00000421922 HECTD2Q5U5R9 776 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 PTRHD1Q6GMV3 140 aaKnown RBP17■□□□□ 0.31
CCDC28B-202ENST00000421922 RAET1GQ6H3X3 334 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 TRIM67Q6ZTA4 783 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 FAM124AQ86V42 546 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 DTX3LQ8TDB6 740 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 SCAMP4Q969E2 229 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 COPS8Q99627 209 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 MCMBPQ9BTE3 642 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 C1QTNF7Q9BXJ2 289 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 SLC13A1Q9BZW2 595 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 ZDHHC3Q9NYG2 299 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 VWA7Q9Y334 891 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 PLXNB3Q9ULL4 1909 aa17■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3DA0A087WVF3 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3IA0A087WXS9 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3EA0A087X179 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3KA0A087X1G2 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 A0A096LPK6 155 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TRBV5-4A0A0C4DH59 114 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3FA6NER0 549 aaPredicted RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3LB9A6J9 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 PLRG1O43660 514 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 GLRA3O75311 464 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 VPS26AO75436 327 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 ZWINTO95229 277 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 ESR1P03372 595 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3HP0C7X1 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 PKMP14618 531 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 GABRG2P18507 467 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 CCNFP41002 786 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 GPR1P46091 355 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 RPS21P63220 83 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 SLC18A2Q05940 514 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 SGCGQ13326 291 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 PDAP1Q13442 181 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3GQ6DHY5 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3CQ6IPX1 549 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 CCDC91Q7Z6B0 441 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D3Q8IZP1 549 aaPredicted RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 MGARPQ8TDB4 240 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 HEXDCQ8WVB3 486 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 DYDC1Q8WWB3 177 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 ISL2Q96A47 359 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 AARSD1Q9BTE6 412 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 PREBQ9HCU5 417 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 SMOXQ9NWM0 555 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 ANKRD6Q9Y2G4 727 aa16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 MTF2Q9Y483 593 aaPredicted RBP16.99■□□□□ 0.31
CCDC28B-202ENST00000421922 A0A087X1B8 175 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 IGLON5A6NGN9 336 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 LRRC72A6NJI9 287 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 H3BMM5 538 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 PHGDHO43175 533 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 CREB1P16220 341 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 MSH3P20585 1137 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 NSG1P42857 185 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 KPNA2P52292 529 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 ADPRHP54922 357 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 TAS2R38P59533 333 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 LDLRAP1Q5SW96 308 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 ANO7Q6IWH7 933 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 TBC1D1Q86TI0 1168 aaPredicted RBP16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 TAX1BP1Q86VP1 789 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 PHYKPLQ8IUZ5 450 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 ZNF687Q8N1G0 1237 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 PNPLA1Q8N8W4 532 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 BANPQ8N9N5 519 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 PJA1Q8NG27 643 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 OSBPL6Q9BZF3 934 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 ZCCHC2Q9C0B9 1178 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 BTBD1Q9H0C5 482 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 CD248Q9HCU0 757 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 INTS9Q9NV88 658 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 MKS1Q9NXB0 559 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 TAS2R13Q9NYV9 303 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 DCDC2Q9UHG0 476 aa16.98■□□□□ 0.31
CCDC28B-202ENST00000421922 TM9SF1O15321 606 aa16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 OR1I1O60431 355 aa16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 RNGTTO60942 597 aaKnown RBP16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 CHRM3P20309 590 aa16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 KCNA4P22459 653 aa16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 RPS3P23396 243 aaKnown RBP eCLIP16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 ADARP55265 1226 aaKnown RBP16.97■□□□□ 0.31
CCDC28B-202ENST00000421922 TAS2R39P59534 338 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 515.5 ms