RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 LUMP51884 338 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 KLHL22Q53GT1 634 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 PLEKHG4Q58EX7 1191 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 C6orf52Q5T4I8 152 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 PAMR1Q6UXH9 720 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 DNAAF5Q86Y56 855 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 UBE2J2Q8N2K1 259 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 SPATA20Q8TB22 786 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 HELQQ8TDG4 1101 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ASB15Q8WXK1 588 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 HOPXQ9BPY8 73 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 BRD9Q9H8M2 597 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 PARPBPQ9NWS1 579 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 LYARQ9NX58 379 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 EFCAB9A8MZ26 197 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ATP6V1G1O75348 118 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 TRBC1P01850 177 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC6A4P31645 630 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF267Q14586 743 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 DCST1Q5T197 706 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 CHSY3Q70JA7 882 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 MFSD1Q9H3U5 465 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 RETREG1Q9H6L5 497 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 TRIP11Q15643 1979 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 TSPAN3O60637 253 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 MAP3K8P41279 467 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 RAET1GQ6H3X3 334 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 BORCS8Q96FH0 119 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 SSX3Q99909 188 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC5A7Q9GZV3 580 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 SMPD3Q9NY59 655 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 RPL26L1Q9UNX3 145 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 U3KQV3 271 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ISPDA4D126 451 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 OTOL1A6NHN0 477 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 IL12BP29460 328 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 RPA4Q13156 261 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF268Q14587 947 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF517Q6ZMY9 492 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 TCEAL4Q96EI5 215 aa13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 TDRD3Q9H7E2 651 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-204ENST00000413716 TTC3P53804 2025 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 KCNQ3O43525 872 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 PROSCO94903 275 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.291e-7■■■□□ 17
CCDC88A-204ENST00000413716 TTI2Q6NXR4 508 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 C3orf33Q6P1S2 294 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 WDR49Q8IV35 697 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 OR2T34Q8NGX1 318 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 OR2T3Q8NH03 318 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 SYT4Q9H2B2 425 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 PRDM16Q9HAZ2 1276 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 COPS7AQ9UBW8 275 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 UBQLN2Q9UHD9 624 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 NARFQ9UHQ1 456 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 HYKKA2RU49 373 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 XYLBO75191 536 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF823P16415 610 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 MADCAM1Q13477 382 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 MTFR2Q6P444 385 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CEP41Q9BYV8 373 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 BRD7Q9NPI1 651 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 POLR3HQ9Y535 204 aaPredicted RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 C1orf196B1AJZ1 125 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ENTPD5O75356 428 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 HSPA14Q0VDF9 509 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 XKR4Q5GH76 650 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 GCNT6Q5T4J0 391 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 GARNL3Q5VVW2 1013 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 SMARCD3Q6STE5 483 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 GRIN3AQ8TCU5 1115 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CNDP2Q96KP4 475 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 TFR2Q9UP52 801 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CPSF1Q10570 1443 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ACVR2AP27037 513 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 GNA12Q03113 381 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CHAF1BQ13112 559 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ACVR2BQ13705 512 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ALX1Q15699 326 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC30A10Q6XR72 485 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 TMEM184CQ9NVA4 438 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 WDR62O43379 1518 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 GLI1P08151 1106 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 TACSTD2P09758 323 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 SSTR1P30872 391 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 AMIGO2Q86SJ2 522 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CREB3L1Q96BA8 519 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 NSMCE3Q96MG7 304 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 TARS2Q9BW92 718 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 PIH1D1Q9NWS0 290 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 IFNA1P01562 189 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC6A9P48067 706 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 SNRPD1P62314 119 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 BCL2A1Q16548 175 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 PROSER3Q2NL68 480 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 POMZP3Q6PJE2 187 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CES3Q6UWW8 571 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 DNAAF1Q8NEP3 725 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF570Q96NI8 536 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ERVK-5Q9HDB9 667 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms