RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 VPS35Q96QK1 796 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 KLF6Q99612 283 aaPredicted RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 COPS8Q99627 209 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 FAM126AQ9BYI3 521 aaPredicted RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 ROPN1BQ9BZX4 212 aaPredicted RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 PPCSQ9HAB8 311 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 ROPN1Q9HAT0 212 aaPredicted RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 INTS10Q9NVR2 710 aaKnown RBP17.92■□□□□ 0.46
SDC1-203ENST00000403076 SMOXQ9NWM0 555 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 ZDHHC3Q9NYG2 299 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 NFS1Q9Y697 457 aa17.92■□□□□ 0.46
SDC1-203ENST00000403076 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 AGAP14A8MT82 685 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 PRAMEF26H0Y7S4 382 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 FAM155BO75949 473 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 AHSGP02765 367 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 ZNF7P17097 686 aaPredicted RBP17.91■□□□□ 0.46
SDC1-203ENST00000403076 MSH3P20585 1137 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 AKT1P31749 480 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 SPRP35270 261 aaPredicted RBP17.91■□□□□ 0.46
SDC1-203ENST00000403076 IGFALSP35858 605 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 ABCG1P45844 678 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 LEPRP48357 1165 aaKnown RBP17.91■□□□□ 0.46
SDC1-203ENST00000403076 CSE1LP55060 971 aaKnown RBP17.91■□□□□ 0.46
SDC1-203ENST00000403076 ANGPT1Q15389 498 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 TYSND1Q2T9J0 566 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 ZNF789Q5FWF6 425 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 LDLRAP1Q5SW96 308 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 TAOK1Q7L7X3 1001 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 C11orf74Q86VG3 221 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 HEATR4Q86WZ0 1026 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 TMEFF1Q8IYR6 380 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 RBFAQ8N0V3 343 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 ATXN7L3BQ96GX2 97 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 HIC2Q96JB3 615 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 SERAC1Q96JX3 654 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 WDR26Q9H7D7 661 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 EBF2Q9HAK2 575 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 C11orf16Q9NQ32 467 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 PHPT1Q9NRX4 125 aaPredicted RBP17.91■□□□□ 0.46
SDC1-203ENST00000403076 PSMC3IPQ9P2W1 217 aaPredicted RBP17.91■□□□□ 0.46
SDC1-203ENST00000403076 FETUBQ9UGM5 382 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 TMPRSS11EQ9UL52 423 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 CA5BQ9Y2D0 317 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 CRYL1Q9Y2S2 319 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 VCANP13611 3396 aa17.91■□□□□ 0.46
SDC1-203ENST00000403076 DOCK9Q9BZ29 2069 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 PLXNA2O75051 1894 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 A0A1W2PPC4 97 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 PRR33A8MZF0 331 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 CFAP99D6REC4 459 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 TCEA3O75764 348 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 ASMTLO95671 621 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 SOD1P00441 154 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 RALBP11234 206 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 PTGER3P43115 390 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 SERPINB9P50453 376 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 CLDN2P57739 230 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 ITIH4Q14624 930 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 LGSNQ5TDP6 509 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 CNSTQ6PJW8 725 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 LPCAT2Q7L5N7 544 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 GALNT7Q86SF2 657 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 CROCCP2Q86T23 111 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 TRIM74Q86UV6 250 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 HEXDCQ8WVB3 486 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 GAB3Q8WWW8 586 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 HSPA12BQ96MM6 686 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 CLPBQ9H078 707 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 CCDC68Q9H2F9 335 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 ACBD3Q9H3P7 528 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 VIPAS39Q9H9C1 493 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 TBK1Q9UHD2 729 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 EIF2B4Q9UI10 523 aaKnown RBP17.9■□□□□ 0.46
SDC1-203ENST00000403076 OR1A2Q9Y585 309 aa17.9■□□□□ 0.46
SDC1-203ENST00000403076 C10orf142B7Z368 130 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 OR1I1O60431 355 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 GPR37L1O60883 481 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 MTX2O75431 263 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 KRT38O76015 456 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 SP9P0CG40 484 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 CD27P26842 260 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 TEAD1P28347 426 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 GABRB3P28472 473 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 FMO4P31512 558 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 CDK3Q00526 305 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 ZNF844Q08AG5 666 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 SRSF5Q13243 272 aaKnown RBP17.89■□□□□ 0.45
SDC1-203ENST00000403076 ZNF648Q5T619 568 aaPredicted RBP17.89■□□□□ 0.45
SDC1-203ENST00000403076 ADGRD1Q6QNK2 874 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 KDM7AQ6ZMT4 941 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 CEP68Q76N32 757 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 ARMCX6Q7L4S7 300 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 SLC41A1Q8IVJ1 513 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 RGL4Q8IZJ4 473 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 DDHD1Q8NEL9 900 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 DCAKDQ8WVC6 231 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 RBBP8Q99708 897 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 APOOQ9BUR5 198 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 TMEM109Q9BVC6 243 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms