RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ARL2P36404 184 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 ATXN1P54253 815 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 RAB30Q15771 203 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 TBC1D25Q3MII6 688 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 DNAJC11Q9NVH1 559 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 NFKBIEO00221 500 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 OR5F1O95221 314 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 HNRNPH1P31943 449 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 GBE1Q04446 702 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 HPS6Q86YV9 775 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 RBM18Q96H35 190 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 PDP2Q9P2J9 529 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 ADGRB2O60241 1585 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PNMA8CA0A1B0GUJ8 204 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 XKRYO14609 159 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PRMT5O14744 637 aaPredicted RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 NECTIN3Q9NQS3 549 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PNO1Q9NRX1 252 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 MAPRE3Q9UPY8 281 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PARP4Q9UKK3 1724 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 A0A1W2PQ45 241 aaPredicted RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 A0A1W2PQY0 241 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 RNASEH2BQ5TBB1 312 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 TBATAQ96M53 351 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 ZNF460Q14592 562 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 NAPRTQ6XQN6 538 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 UNC5BQ8IZJ1 945 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 C8orf59Q8N0T1 100 aaPredicted RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 SLC4A11Q8NBS3 891 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 TSEN2Q8NCE0 465 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 TRNT1Q96Q11 434 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 HCN3Q9P1Z3 774 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 SAMHD1Q9Y3Z3 626 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 GOT2P00505 430 aaKnown RBP11.29□□□□□ -0.6
TTC28-201ENST00000397906 RPIAP49247 311 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PTPN5P54829 565 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 ATP6V0D1P61421 351 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 HIPK1Q86Z02 1210 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PCYOX1Q9UHG3 505 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PCDHB11Q9Y5F2 797 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 PRMT2P55345 433 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 OR10H5Q8NGA6 315 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 HBEGFQ99075 208 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 CDH19Q9H159 772 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 ABI3Q9P2A4 366 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 TSC22D4Q9Y3Q8 395 aa11.29□□□□□ -0.6
TTC28-201ENST00000397906 RCCD1A6NED2 376 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 HYAL2Q12891 473 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 ZMIZ2Q8NF64 920 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 FUCA2Q9BTY2 467 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 MRPS30Q9NP92 439 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 TLR9Q9NR96 1032 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 NR2E1Q9Y466 385 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 TIMM22Q9Y584 194 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 STXBP1P61764 594 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 USP46P62068 366 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 C2orf80Q0P641 193 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 GMPPBQ9Y5P6 360 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 C5orf60A6NFR6 353 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 PSMD9O00233 223 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 IDO1P14902 403 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 HSPA7P48741 367 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 GFOD2Q3B7J2 385 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 POTEHQ6S545 545 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 KXD1Q9BQD3 176 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 SH3GLB1Q9Y371 365 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 RICTORQ6R327 1708 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 TCEA3O75764 348 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 STATHP02808 62 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 GATMP50440 423 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 BBS12Q6ZW61 710 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 GRASPQ7Z6J2 395 aaPredicted RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 SLC51AQ86UW1 340 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 ECHDC2Q86YB7 292 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 NPLOC4Q8TAT6 608 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 CEP44Q9C0F1 390 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 CRISPLD1Q9H336 500 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 INPPL1O15357 1258 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 PKMP14618 531 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 EFNA1P20827 205 aaPredicted RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 PLA2G16P53816 162 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 CLEC6AQ6EIG7 209 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 ESRP1Q6NXG1 681 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 ATXN2LQ8WWM7 1075 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 CARS2Q9HA77 564 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 ACTR1BP42025 376 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 MLLT3P42568 568 aaPredicted RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 ACTR1AP61163 376 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 RFX4Q33E94 735 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 DNAJB7Q7Z6W7 309 aaPredicted RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 TERB1Q8NA31 727 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 ENKURQ8TC29 256 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 AENQ8WTP8 325 aaKnown RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 IRGQQ8WZA9 623 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 PIGKQ92643 395 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 EXD2Q9NVH0 621 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 SEC14L3Q9UDX4 400 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 MSX2P35548 267 aaPredicted RBP11.28□□□□□ -0.6
TTC28-201ENST00000397906 TIGD5Q53EQ6 642 aa11.28□□□□□ -0.6
TTC28-201ENST00000397906 PEG10Q86TG7 708 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms