RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CLDN5O00501 218 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 DHX15O43143 795 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CLDN9O95484 217 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 SPAM1P38567 509 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 GRM5P41594 1212 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 TYSND1Q2T9J0 566 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 MAB21L3Q8N8X9 362 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 KCNMB3Q9NPA1 279 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 TNS2Q63HR2 1409 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC30A4O14863 429 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 BANF1O75531 89 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 NADKO95544 446 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 COL6A2P12110 1019 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 GABRR2P28476 465 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PNLIPRP1P54315 467 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 POMZP3Q6PJE2 187 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CPSF7Q8N684 471 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 NAT16Q8N8M0 369 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PHF12Q96QT6 1004 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CDT1Q9H211 546 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 DCLK1O15075 740 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PAPSS1O43252 624 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 GMFGO60234 142 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 IDSP22304 550 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PSMA1P25786 263 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 HTR7P34969 479 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PSMD8P48556 350 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 DCST1Q5T197 706 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 QSOX2Q6ZRP7 698 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PARP8Q8N3A8 854 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 ZNF433Q8N7K0 673 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PIGXQ8TBF5 258 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 LGMNQ99538 433 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 ZDHHC4Q9NPG8 344 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CALML5Q9NZT1 146 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 MAN2B2Q9Y2E5 1009 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 IQGAP1P46940 1657 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 AREL1O15033 823 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PAPSS2O95340 614 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PCSK2P16519 638 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 C9orf57Q5W0N0 161 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PYHIN1Q6K0P9 492 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC30A6Q6NXT4 461 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 MREGQ8N565 214 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 SETD6Q8TBK2 473 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 ACOT12Q8WYK0 555 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 TTPALQ9BTX7 342 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 NUDT4Q9NZJ9 180 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 ASTN1O14525 1302 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 PSMD10O75832 226 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 AP2A2O94973 939 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 SP100P23497 879 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CRHR1P34998 444 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 LIPEQ05469 1076 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 MAP2K5Q13163 448 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 MTX3Q5HYI7 312 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 GALNT13Q8IUC8 556 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CHST4Q8NCG5 386 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 AGO3Q9H9G7 860 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 SCAMP3O14828 347 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 ALAS2P22557 587 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 C2orf80Q0P641 193 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 GALNT5Q7Z7M9 940 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 UNC5BQ8IZJ1 945 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 HIST1H2AAQ96QV6 131 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 FUCA2Q9BTY2 467 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 IL1RAPQ9NPH3 570 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 HCN3Q9P1Z3 774 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 HMGXB4Q9UGU5 601 aa12.72□□□□□ -0.37
CCDC88C-204ENST00000389857 CD247P20963 164 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 ITPKAP23677 461 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 WNT3AP56704 352 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 SP3Q02447 781 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 VPS26BQ4G0F5 336 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 RNASE12Q5GAN4 147 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 HECTD2Q5U5R9 776 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 GPR142Q7Z601 462 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 TMEM161BQ8NDZ6 487 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 STYXQ8WUJ0 223 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 FCRL2Q96LA5 508 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 MYOCQ99972 504 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 PTPRMP28827 1452 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 FAM240BA0A1B0GVZ2 78 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 OR14I1A6ND48 311 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CDC40O60508 579 aaKnown RBP eCLIP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 FKTNO75072 461 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 NUDT17P0C025 328 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 ALDH4A1P30038 563 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CD52P31358 61 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 PRR5P85299 388 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC9A9Q8IVB4 645 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 DNAJC28Q9NX36 388 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CFAP97Q9P2B7 532 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 C5orf60A6NFR6 353 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 TNFRSF11BO00300 401 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 TLX3O43711 291 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 UBXN7O94888 489 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 GSTT2BP0CG30 244 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 KIR3DL1P43629 444 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CASP5P51878 434 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms