RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TAS2R13Q9NYV9 303 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CLEC4EQ9ULY5 219 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 BACE2Q9Y5Z0 518 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 KLHL33A6NCF5 533 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 BTN3A1O00481 513 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 NR5A2O00482 541 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 NME4O00746 187 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 KLK8O60259 260 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CTPS1P17812 591 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 LPOP22079 712 aaPredicted RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 HOXD10P28358 340 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 GKP32189 559 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 TUFMP49411 452 aaKnown RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ALDH7A1P49419 539 aaKnown RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ATN1P54259 1190 aaPredicted RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CAPRIN1Q14444 709 aaKnown RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 C6orf52Q5T4I8 152 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CHST9Q7L1S5 443 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 GALNT4Q8N4A0 578 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 FBXO39Q8N4B4 442 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ICA1LQ8NDH6 482 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 STAG3L4Q8TBR4 150 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ALG14Q96F25 216 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 SPAG4Q9NPE6 437 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 PCTPQ9UKL6 214 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 YIPF1Q9Y548 306 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 PITPNM1O00562 1244 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 GAPDHSO14556 408 aaPredicted RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 SMIM18P0DKX4 95 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ZNF26P17031 533 aaPredicted RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ACADVLP49748 655 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 VEGFBP49765 207 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ATP4BP51164 291 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 RPS6KA3P51812 740 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 LAMB3Q13751 1172 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 PLA2G4EQ3MJ16 856 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ZFP1Q6P2D0 407 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CPNE9Q8IYJ1 553 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CARNMT1Q8N4J0 409 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 AFAP1L2Q8N4X5 818 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ZNF461Q8TAF7 563 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 VOPP1Q96AW1 172 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 LRGUKQ96M69 825 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 CDK15Q96Q40 435 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 FEM1AQ9BSK4 669 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 SLC25A23Q9BV35 468 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 MRPL9Q9BYD2 267 aaKnown RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 TRIM4Q9C037 500 aa13.28□□□□□ -0.28
CCDC3-202ENST00000378839 AFF4Q9UHB7 1163 aaKnown RBP13.28□□□□□ -0.28
CCDC3-202ENST00000378839 ANKRD12Q6UB98 2062 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 A0A1B0GTW7 788 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 C7orf72A4D263 438 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 C2orf81A6NN90 581 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 SMAD6O43541 496 aaKnown RBP13.27□□□□□ -0.28
CCDC3-202ENST00000378839 DENRO43583 198 aaKnown RBP13.27□□□□□ -0.28
CCDC3-202ENST00000378839 FZD6O60353 706 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 TBL1XO60907 577 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 HGFP14210 728 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 ATP6V1B2P21281 511 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 LCP2Q13094 533 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 OVCA2Q8WZ82 227 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 RPL10LQ96L21 214 aaKnown RBP13.27□□□□□ -0.28
CCDC3-202ENST00000378839 BTBD9Q96Q07 612 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 CDK5RAP1Q96SZ6 601 aaKnown RBP13.27□□□□□ -0.28
CCDC3-202ENST00000378839 TRPM5Q9NZQ8 1165 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 ARIH1Q9Y4X5 557 aaPredicted RBP13.27□□□□□ -0.28
CCDC3-202ENST00000378839 TANC1Q9C0D5 1861 aa13.27□□□□□ -0.28
CCDC3-202ENST00000378839 PKMP14618 531 aaKnown RBP13.27□□□□□ -0.29
CCDC3-202ENST00000378839 ETS2P15036 469 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 CLCN7P51798 805 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 RAD51Q06609 339 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 GEN1Q17RS7 908 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 AAK1Q2M2I8 961 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 KIF19Q2TAC6 998 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 ZRANB3Q5FWF4 1079 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 HERC6Q8IVU3 1022 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 APCDD1Q8J025 514 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 BBS5Q8N3I7 341 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 VCX3BQ9H321 246 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 PDP2Q9P2J9 529 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 CROTQ9UKG9 612 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 PCDHB9Q9Y5E1 797 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 GPR45Q9Y5Y3 372 aa13.27□□□□□ -0.29
CCDC3-202ENST00000378839 C15orf38-AP3S2A0A0A6YYH1 394 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TCRBV3S1A0A5B6 114 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 GFRA2O00451 464 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 CXCL10P02778 98 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SPATA31D3P0C874 917 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 PRR35P0CG20 571 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 CES1P23141 567 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 RHDQ02161 417 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TWF1Q12792 350 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 SPATA31D4Q6ZUB0 917 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 LYSMD3Q7Z3D4 306 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 ARPINQ7Z6K5 226 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 MARVELD2Q8N4S9 558 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 TTC16Q8NEE8 873 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 PDZD8Q8NEN9 1154 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 OR52B6Q8NGF0 335 aa13.26□□□□□ -0.29
CCDC3-202ENST00000378839 B4GALNT2Q8NHY0 566 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms