RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TBCDQ9BTW9 1192 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PRM3Q9NNZ6 103 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ARMC1Q9NVT9 282 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ACTR3BQ9P1U1 418 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PADI4Q9UM07 663 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 GUCA1CO95843 209 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 C1RP00736 705 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 LDLRP01130 860 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 FDXRP22570 491 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 RPS9P46781 194 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TIAL1Q01085 375 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 IL1RL1Q01638 556 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 LAPTM5Q13571 262 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 RAB39AQ14964 217 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 FAM110CQ1W6H9 321 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 SYVN1Q86TM6 617 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 OR10Q1Q8NGQ4 319 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 FBXO30Q8TB52 745 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 STAG3L4Q8TBR4 150 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 SGCDQ92629 289 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 BHMTQ93088 406 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 CDKN2AIPNLQ96HQ2 116 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PLEKHG4BQ96PX9 1271 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 CHID1Q9BWS9 393 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 POLR1EQ9GZS1 481 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PCDHGC4Q9Y5F7 938 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 BOLA2-SMG1P6H3BVE0 249 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 GPR182O15218 404 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 MAN1A2O60476 641 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 SLC22A3O75751 556 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 KCNH1O95259 989 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 CHEK2O96017 543 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ALBP02768 609 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 CAPNS1P04632 268 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF182P17025 639 aaPredicted RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 VARSP26640 1264 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 MAP4P27816 1152 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 RAD51Q06609 339 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 LCP2Q13094 533 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 IMPG1Q17R60 797 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ZBED5Q49AG3 693 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 AARS2Q5JTZ9 985 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 OGFOD2Q6N063 350 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 BORAQ6PGQ7 559 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 BLOC1S3Q6QNY0 202 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ABRAXAS1Q6UWZ7 409 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 DCP1BQ8IZD4 617 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 OR52B6Q8NGF0 335 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 HM13Q8TCT9 377 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 GIPC2Q8TF65 315 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 FIG4Q92562 907 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TMEM125Q96AQ2 219 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 BIRC7Q96CA5 298 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 GPATCH1Q9BRR8 931 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TRIM62Q9BVG3 475 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 OSBPL6Q9BZF3 934 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 NACA2Q9H009 215 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 RPF2Q9H7B2 306 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 ZFYVE28Q9HCC9 887 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 EXD2Q9NVH0 621 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 TAS2R13Q9NYV9 303 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 PKD2L2Q9NZM6 624 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 MARCH2Q9P0N8 246 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 WARS2Q9UGM6 360 aaKnown RBP12.05□□□□□ -0.48
CLIP3-201ENST00000360535 SPO11Q9Y5K1 396 aa12.05□□□□□ -0.48
CLIP3-201ENST00000360535 MROH6A6NGR9 719 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 TNFRSF10BO14763 440 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 B4GALT3O60512 393 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 RPP40O75818 363 aaKnown RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 IDO1P14902 403 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 RHOQP17081 205 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 POLR2JP52435 117 aaKnown RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 NUP107P57740 925 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 GLYATQ6IB77 296 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 NANOGP8Q6NSW7 305 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 C16orf87Q6PH81 154 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 GLT6D1Q7Z4J2 308 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 KIAA2013Q8IYS2 634 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 HS3ST5Q8IZT8 346 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 LGI2Q8N0V4 545 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 LPCAT1Q8NF37 534 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MYRFLQ96LU7 910 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MUS81Q96NY9 551 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 ATOH8Q96SQ7 321 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SGIP1Q9BQI5 828 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 NPLQ9BXD5 320 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 NANOGQ9H9S0 305 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SMPD3Q9NY59 655 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 AQP12BA6NM10 295 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 BBIP1A8MTZ0 92 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 E5RI56 91 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 NOBOXO60393 691 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 NOL3O60936 208 aaKnown RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SERPINF2P08697 491 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 CNPP09543 421 aaKnown RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 CCT8P50990 548 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 KCNQ1P51787 676 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 TUSC3Q13454 348 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 ANKRD34AQ69YU3 496 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MSANTD2Q6P1R3 559 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms