RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 DEFB118Q96PH6 123 aa15.8■□□□□ 0.12
HMGA1-202ENST00000347617 SLC2A13Q96QE2 648 aa15.8■□□□□ 0.12
HMGA1-202ENST00000347617 ACSS2Q9NR19 701 aa15.8■□□□□ 0.12
HMGA1-202ENST00000347617 MAP10Q9P2G4 905 aa15.8■□□□□ 0.12
HMGA1-202ENST00000347617 CACNG4Q9UBN1 327 aa15.8■□□□□ 0.12
HMGA1-202ENST00000347617 TCRBV5S2A0A599 114 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 TMX2-CTNND1H3BSU7 103 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 CLDN5O00501 218 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 TULP3O75386 442 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 OAZ2O95190 189 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 NPPAP01160 153 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 CXCL10P02778 98 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 FGF4P08620 206 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 CCL5P13501 91 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 CPB1P15086 417 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 LEPRP48357 1165 aaKnown RBP15.79■□□□□ 0.12
HMGA1-202ENST00000347617 SERPINB10P48595 397 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 TAS2R39P59534 338 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 TPI1P60174 286 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 HTRA3P83110 453 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 GNA12Q03113 381 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 OLIG2Q13516 323 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 CYP51A1Q16850 503 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 KIF19Q2TAC6 998 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 OVOS1Q6IE37 1185 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 THAP5Q7Z6K1 395 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 RETREG3Q86VR2 466 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 LRRC58Q96CX6 371 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 SMOQ99835 787 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 OMDQ99983 421 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 HGH1Q9BTY7 390 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 CRISPLD2Q9H0B8 497 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 ING2Q9H160 280 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 GSTO2Q9H4Y5 243 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 ARMC7Q9H6L4 198 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 PCDHB7Q9Y5E2 793 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 PCDHA9Q9Y5H5 950 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 TIMM13Q9Y5L4 95 aaPredicted RBP15.79■□□□□ 0.12
HMGA1-202ENST00000347617 SHROOM3Q8TF72 1996 aa15.79■□□□□ 0.12
HMGA1-202ENST00000347617 GRXCR2A6NFK2 248 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 NR5A2O00482 541 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 SYN3O14994 580 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 AREL1O15033 823 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 DEAF1O75398 565 aaPredicted RBP15.78■□□□□ 0.12
HMGA1-202ENST00000347617 KATNA1O75449 491 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 BEST1O76090 585 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 HDCP19113 662 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 SLC6A2P23975 617 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 EEF1B2P24534 225 aaKnown RBP15.78■□□□□ 0.12
HMGA1-202ENST00000347617 ADRA1BP35368 520 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 BRCC3P46736 316 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 ALDH3A2P51648 485 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 MAP3K7CLP57077 242 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 TSPY1Q01534 308 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 ADIGQ0VDE8 80 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 CRY1Q16526 586 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 PM20D1Q6GTS8 502 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 OFCC1Q8IZS5 231 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 DBF4BQ8NFT6 615 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 AURKBQ96GD4 344 aaPredicted RBP15.78■□□□□ 0.12
HMGA1-202ENST00000347617 TBL1YQ9BQ87 522 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 TRIM62Q9BVG3 475 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 RNF208Q9H0X6 261 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 RMND5AQ9H871 391 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 AKIP1Q9NQ31 210 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 CMTM6Q9NX76 183 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 SFMBT1Q9UHJ3 866 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 FIS1Q9Y3D6 152 aa15.78■□□□□ 0.12
HMGA1-202ENST00000347617 ZFC3H1O60293 1989 aaKnown RBP15.78■□□□□ 0.12
HMGA1-202ENST00000347617 HHLA1C9JL84 531 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 FXYD1O00168 92 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ITIH1P19827 911 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 HTR1EP28566 365 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 DAOAP59103 153 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 FXNQ16595 210 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 PPP1R3AQ16821 1122 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ARL13BQ3SXY8 428 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 OTUD1Q5VV17 481 aaPredicted RBP15.77■□□□□ 0.12
HMGA1-202ENST00000347617 BTBD8Q5XKL5 378 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ANKRD13BQ86YJ7 626 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 CPNE9Q8IYJ1 553 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 DCP1BQ8IZD4 617 aaKnown RBP15.77■□□□□ 0.12
HMGA1-202ENST00000347617 C8orf59Q8N0T1 100 aaPredicted RBP15.77■□□□□ 0.12
HMGA1-202ENST00000347617 CRIPAKQ8N1N5 446 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ZMIZ2Q8NF64 920 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 MAGEE2Q8TD90 523 aaPredicted RBP15.77■□□□□ 0.12
HMGA1-202ENST00000347617 PGAP3Q96FM1 320 aaPredicted RBP15.77■□□□□ 0.12
HMGA1-202ENST00000347617 FAM193BQ96PV7 902 aaPredicted RBP15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ANKHQ9HCJ1 492 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 TRPV5Q9NQA5 729 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ANKMY1Q9P2S6 941 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 ENPP5Q9UJA9 477 aa15.77■□□□□ 0.12
HMGA1-202ENST00000347617 FAM149AA5PLN7 773 aa15.77■□□□□ 0.11
HMGA1-202ENST00000347617 M0QYT0 321 aa15.77■□□□□ 0.11
HMGA1-202ENST00000347617 SUPT7LO94864 414 aa15.77■□□□□ 0.11
HMGA1-202ENST00000347617 PABPC1P11940 636 aaKnown RBP15.77■□□□□ 0.11
HMGA1-202ENST00000347617 LBPP18428 481 aa15.77■□□□□ 0.11
HMGA1-202ENST00000347617 GEMP55040 296 aa15.77■□□□□ 0.11
HMGA1-202ENST00000347617 YWHAHQ04917 246 aaPredicted RBP15.77■□□□□ 0.11
HMGA1-202ENST00000347617 DAG1Q14118 895 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms