RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 CD3EAPO15446 510 aaKnown RBP13□□□□□ -0.33
COL18A1-201ENST00000342220 CPA3P15088 417 aa13□□□□□ -0.33
COL18A1-201ENST00000342220 ABCE1P61221 599 aaKnown RBP13□□□□□ -0.33
COL18A1-201ENST00000342220 GSTA3Q16772 222 aa13□□□□□ -0.33
COL18A1-201ENST00000342220 DGKKQ5KSL6 1271 aa13□□□□□ -0.33
COL18A1-201ENST00000342220 LPCAT4Q643R3 524 aa13□□□□□ -0.33
COL18A1-201ENST00000342220 ASTLQ6HA08 431 aaPredicted RBP13□□□□□ -0.33
COL18A1-201ENST00000342220 LRRC49Q8IUZ0 686 aa13□□□□□ -0.33
COL18A1-201ENST00000342220 SLC25A13Q9UJS0 675 aa13□□□□□ -0.33
COL18A1-201ENST00000342220 FKBP6O75344 327 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 PABPC1P11940 636 aaKnown RBP12.99□□□□□ -0.33
COL18A1-201ENST00000342220 HNRNPLP14866 589 aaKnown RBP eCLIP12.99□□□□□ -0.332e-46■■■■■ 97.6
COL18A1-201ENST00000342220 CDH13P55290 713 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 CCNIQ14094 377 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 PITRM1Q5JRX3 1037 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 THOC7Q6I9Y2 204 aaKnown RBP12.99□□□□□ -0.33
COL18A1-201ENST00000342220 SETD3Q86TU7 594 aaPredicted RBP12.99□□□□□ -0.33
COL18A1-201ENST00000342220 FGF13Q92913 245 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 KLHL32Q96NJ5 620 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 LRRC3BQ96PB8 259 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 MYOCQ99972 504 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 NMRAL1Q9HBL8 299 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 VPS45Q9NRW7 570 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 CATSPERZQ9NTU4 200 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 FNDC1Q4ZHG4 1894 aaPredicted RBP12.99□□□□□ -0.33
COL18A1-201ENST00000342220 ANKRD66B4E2M5 251 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 TIMM44O43615 452 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 CRTAMO95727 393 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 HTR7P34969 479 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 SLC6A11P48066 632 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 SOX9P48436 509 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 LIMK2P53671 638 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 SEC13P55735 322 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 ST8SIA6P61647 398 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 ASPHQ12797 758 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 TMEM259Q4ZIN3 620 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 ZC3HC1Q86WB0 502 aaKnown RBP12.99□□□□□ -0.33
COL18A1-201ENST00000342220 MDGA1Q8NFP4 955 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 OR4L1Q8NH43 312 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 OVCA2Q8WZ82 227 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 PBXIP1Q96AQ6 731 aa12.99□□□□□ -0.33
COL18A1-201ENST00000342220 WRAP53Q9BUR4 548 aaKnown RBP12.99□□□□□ -0.33
COL18A1-201ENST00000342220 DCXO43602 365 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 GRK2P25098 689 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ARNTP27540 789 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 AKT1P31749 480 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 FNDC3BQ53EP0 1204 aaKnown RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 TCHHL1Q5QJ38 904 aaPredicted RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 MRNIPQ6NTE8 343 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 FRMD7Q6ZUT3 714 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 HPS6Q86YV9 775 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 DEFB107AQ8IZN7 70 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 MYO19Q96H55 970 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 CDKN2AIPNLQ96HQ2 116 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 KIFC1Q9BW19 673 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PRKD2Q9BZL6 878 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 STN1Q9H668 368 aaKnown RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 DNAJC28Q9NX36 388 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 CRLS1Q9UJA2 301 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 TSC22D4Q9Y3Q8 395 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 DYTNA2CJ06 578 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 RNASEH1O60930 286 aaKnown RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 IGSF6O95976 241 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 LINC00271P0C7V0 271 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 CD1EP15812 388 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PPP3CCP48454 512 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PFKPQ01813 784 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 SFT2D3Q587I9 215 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 DHDDSQ86SQ9 333 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ZNF781Q8N8C0 355 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 OR13J1Q8NGT2 312 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PPP1R14BQ96C90 147 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ASB8Q9H765 288 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 SPHK2Q9NRA0 654 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ADAMTS6Q9UKP5 1117 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 E9PBE3 544 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 CCNT2O60583 730 aaKnown RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 KLHL41O60662 606 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 NIPSNAP2O75323 286 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PGM3O95394 542 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 GUCA1CO95843 209 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 FGF1P05230 155 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ATXN1LP0C7T5 689 aaKnown RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 GFAPP14136 432 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ITGAXP20702 1163 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 HALP42357 657 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 KCTD21Q4G0X4 260 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ARSIQ5FYB1 569 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PTRHD1Q6GMV3 140 aaKnown RBP12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PSAPL1Q6NUJ1 521 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 KLHDC10Q6PID8 442 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 ISLR2Q6UXK2 745 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 CLIP3Q96DZ5 547 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 MARK4Q96L34 752 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 COMMD8Q9NX08 183 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 PACSIN3Q9UKS6 424 aa12.98□□□□□ -0.33
COL18A1-201ENST00000342220 TRANK1O15050 2925 aa12.97□□□□□ -0.33
COL18A1-201ENST00000342220 ZBTB14O43829 449 aa12.97□□□□□ -0.33
COL18A1-201ENST00000342220 HLA-DPA1P20036 260 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms