RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PCDH9Q9HC56 1237 aa4.14□□□□□ -1.75
NEDD4-201ENST00000338963 DUSP22Q9NRW4 184 aa4.14□□□□□ -1.75
NEDD4-201ENST00000338963 CUEDC1Q9NWM3 386 aaPredicted RBP4.14□□□□□ -1.75
NEDD4-201ENST00000338963 LYARQ9NX58 379 aaKnown RBP4.14□□□□□ -1.75
NEDD4-201ENST00000338963 CNTN3Q9P232 1028 aa4.14□□□□□ -1.75
NEDD4-201ENST00000338963 HSPB11Q9Y547 144 aa4.14□□□□□ -1.75
NEDD4-201ENST00000338963 CEP152O94986 1710 aa4.14□□□□□ -1.75
NEDD4-201ENST00000338963 HSBP1L1C9JCN9 74 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 PRRT4C9JH25 899 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TEX46H3BTG2 121 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 H7C1Q1 480 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 PDXKO00764 312 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 HCN1O60741 890 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ADH1CP00326 375 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 UQCRFS1P1P0C7P4 283 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SPI1P17947 270 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CDH8P55286 799 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 NOMO3P69849 1222 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CD300CQ08708 224 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 BIKQ13323 160 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 NOMO1Q15155 1222 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 FAM171A1Q5VUB5 890 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 MAP1SQ66K74 1059 aaPredicted RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CASC4Q6P4E1 433 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TFAP2EQ6VUC0 442 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TAC4Q86UU9 113 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 PPM1KQ8N3J5 372 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF366Q8N895 744 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 OR9Q1Q8NGQ5 310 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 DCLRE1CQ96SD1 692 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CLSTN3Q9BQT9 956 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SH2D3AQ9BRG2 576 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 GPR88Q9GZN0 384 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TDRD3Q9H7E2 651 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TCF7L1Q9HCS4 588 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CDYLQ9Y232 598 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 COL15A1P39059 1388 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 DENND3A2RUS2 1198 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 GPR25O00155 361 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CHP2O43745 196 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 FZD6O60353 706 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 EIF1BO60739 113 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 LCKP06239 509 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 PRF1P14222 555 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 MYL9P24844 172 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 PTBP1P26599 531 aaKnown RBP eCLIP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ADH7P40394 386 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 EIF1P41567 113 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SCNN1GP51170 649 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ARFIP1P53367 373 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ITGA1P56199 1179 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SLC13A2Q13183 592 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ASAH1Q13510 395 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 DOC2AQ14183 400 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 MXD4Q14582 209 aaPredicted RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 LCN1P1Q5VSP4 162 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ENOSF1Q7L5Y1 443 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 FAM217AQ8IXS0 508 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ZBTB38Q8NAP3 1195 aaPredicted RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 LPCAT1Q8NF37 534 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 RDH11Q8TC12 318 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 NUDT16Q96DE0 195 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 AGPAT1Q99943 283 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TREX2Q9BQ50 279 aaPredicted RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SPAG4Q9NPE6 437 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SEMA3GQ9NS98 782 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ADA2Q9NZK5 511 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ZSWIM5Q9P217 1185 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 RNF112Q9ULX5 631 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SNX6Q9UNH7 406 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ZCCHC11Q5TAX3 1644 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 A0A087X0B3 334 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 EPHB6O15197 1021 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 TDP2O95551 362 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ALPPP05187 535 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 OR56A5P0C7T3 313 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ITGAMP11215 1152 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 IFI30P13284 250 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SLC2A4P14672 509 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 DARSP14868 501 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 COMTP21964 271 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 MAT2AP31153 395 aaKnown RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 RGS6P49758 472 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 BCAT1P54687 386 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CDH15P55291 814 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 IL1RL1Q01638 556 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 BLOC1S3Q6QNY0 202 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CHSY3Q70JA7 882 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 GDPD3Q7L5L3 318 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 RHOT1Q8IXI2 618 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CBR4Q8N4T8 237 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 GPR156Q8NFN8 814 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF564Q8TBZ8 553 aaPredicted RBP4.13□□□□□ -1.75
NEDD4-201ENST00000338963 SIGLEC10Q96LC7 697 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 MED18Q9BUE0 208 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 GSX2Q9BZM3 304 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 CATSPERBQ9H7T0 1116 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 ARMT1Q9H993 441 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 FOLH1BQ9HBA9 442 aa4.13□□□□□ -1.75
NEDD4-201ENST00000338963 MKNK2Q9HBH9 465 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms