RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CSNK1G3Q9Y6M4 447 aa15.75■□□□□ 0.11
CCDC28A-201ENST00000332797 CABIN1Q9Y6J0 2220 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 MROH6A6NGR9 719 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 GOLGA8MH3BSY2 632 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 TRIM38O00635 465 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 SRP72O76094 671 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 TUBB4AP04350 444 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 ANXA6P08133 673 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 ADRA1DP25100 572 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 MGAT1P26572 445 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 MC4RP32245 332 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 CRADDP78560 199 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 XIAPP98170 497 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 PEX6Q13608 980 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 DHX34Q14147 1143 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 TRIP6Q15654 476 aaKnown RBP15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 GALNT13Q8IUC8 556 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNF398Q8TD17 642 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 OR2M4Q96R27 311 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 C19orf43Q9BQ61 176 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 ASB8Q9H765 288 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 TRIM39Q9HCM9 518 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 NLGN3Q9NZ94 848 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 BFARQ9NZS9 450 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 ATXN10Q9UBB4 475 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 CDC23Q9UJX2 597 aa15.74■□□□□ 0.11
CCDC28A-201ENST00000332797 SPAARA0A1B0GVQ0 90 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 LMO7DNF2Z398 122 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 DNALI1O14645 258 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 SIGLEC6O43699 453 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 AVILO75366 819 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 LDOC1O95751 146 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 GIMD1P0DJR0 217 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 CEACAM1P13688 526 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 ITGALP20701 1170 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 CA5AP35218 305 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 NPY2RP49146 381 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 CKAP4Q07065 602 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 NFATC2Q13469 925 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 SKIDA1Q1XH10 827 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 KHDC1Q4VXA5 237 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 PPM1JQ5JR12 505 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 PCID2Q5JVF3 399 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 TSTD2Q5T7W7 516 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 RNASEH2BQ5TBB1 312 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 MICALCLQ6ZW33 695 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 DGLUCYQ7Z3D6 616 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 TAF8Q7Z7C8 310 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 ADGRG6Q86SQ4 1221 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 GKN2Q86XP6 184 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 PPIL6Q8IXY8 311 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 SCARF2Q96GP6 870 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 CNDP2Q96KP4 475 aaKnown RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 CDC6Q99741 560 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 DUSP23Q9BVJ7 150 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 IL22Q9GZX6 179 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 FAM96AQ9H5X1 160 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 SYBUQ9NX95 663 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 SLC2A6Q9UGQ3 507 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNHIT2Q9UHR6 403 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 PRKAB1Q9Y478 270 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 SLC30A1Q9Y6M5 507 aa15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 COL5A1P20908 1838 aaPredicted RBP15.73■□□□□ 0.11
CCDC28A-201ENST00000332797 YY2O15391 372 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 DNAJC6O75061 913 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNF8P17098 575 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 ARSDP51689 593 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 MRPS25P82663 173 aaKnown RBP15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 PYCR3Q53H96 274 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 ZRANB3Q5FWF4 1079 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 LDLRAP1Q5SW96 308 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 GPRC6AQ5T6X5 926 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 IZUMO3Q5VZ72 239 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 NLRP9Q7RTR0 991 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 CAND1Q86VP6 1230 aaKnown RBP15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 NAT8LQ8N9F0 302 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 MCUQ8NE86 351 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 DDHD1Q8NEL9 900 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 CCL4L1Q8NHW4 92 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 CDKN2AIPNLQ96HQ2 116 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 ZNF778Q96MU6 729 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 RMI1Q9H9A7 625 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 XAB2Q9HCS7 855 aaKnown RBP15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 CHRAC1Q9NRG0 131 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 SMOXQ9NWM0 555 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 TRNAU1APQ9NX07 287 aaKnown RBP15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 CRLS1Q9UJA2 301 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 PLEKHM1Q9Y4G2 1056 aa15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 PCYT1BQ9Y5K3 369 aaPredicted RBP15.72■□□□□ 0.11
CCDC28A-201ENST00000332797 H7C0S8 307 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 VEGFDO43915 354 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 NUAK1O60285 661 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 AKT1P31749 480 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 SIM1P81133 766 aaPredicted RBP15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 ILF3Q12906 894 aaKnown RBP eCLIP15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 GTF2H3Q13889 308 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 WHAMMP3Q1A5X7 153 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 CRTC3Q6UUV7 619 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 SNX20Q7Z614 316 aa15.71■□□□□ 0.11
CCDC28A-201ENST00000332797 PCGF5Q86SE9 256 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms