RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TMEM9BQ9NQ34 198 aa16.38■□□□□ 0.21
PDLIM1-201ENST00000329399 DYRK4Q9NR20 520 aa16.38■□□□□ 0.21
PDLIM1-201ENST00000329399 FOXD2O60548 495 aaPredicted RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 SOCS5O75159 536 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 PCDH8O95206 1070 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 NMBRP28336 390 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 CCNFP41002 786 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 DPP6P42658 865 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 AFF3P51826 1226 aaKnown RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 ACVR1Q04771 509 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 OLIG2Q13516 323 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 THOC5Q13769 683 aaKnown RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 PUM1Q14671 1186 aaKnown RBP eCLIP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 INSCQ1MX18 579 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 TMEM259Q4ZIN3 620 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 TRIM69Q86WT6 500 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 DENND1AQ8TEH3 1009 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 STYXQ8WUJ0 223 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 ISL2Q96A47 359 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 APOPT1Q96IL0 206 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 SERAC1Q96JX3 654 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 TUBGCP5Q96RT8 1024 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 RBBP8Q99708 897 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 TDRD1Q9BXT4 1180 aaKnown RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 CPEB1Q9BZB8 566 aaKnown RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 IQCGQ9H095 443 aaKnown RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 PREBQ9HCU5 417 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 PIH1D1Q9NWS0 290 aaKnown RBP16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 SUSD2Q9UGT4 822 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 ANKRD6Q9Y2G4 727 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 ASPMQ8IZT6 3477 aa16.37■□□□□ 0.21
PDLIM1-201ENST00000329399 A0A1W2PPM1 405 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 H0Y8X5 98 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 GIPC1O14908 333 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 AREL1O15033 823 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 RAD51BO15315 384 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 ERVK-10P10266 1014 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 ARCN1P48444 511 aaKnown RBP16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 LIMK2P53671 638 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 RACK1P63244 317 aaKnown RBP16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 RAD51Q06609 339 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 PTPRRQ15256 657 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 DBN1Q16643 649 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 HLA-BQ31612 363 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 SH2D5Q6ZV89 423 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 CCDC91Q7Z6B0 441 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 TTC7BQ86TV6 843 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 HORMAD1Q86X24 394 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 SLC25A41Q8N5S1 370 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 CKAP2Q8WWK9 683 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 PPP1R16AQ96I34 528 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 LRIG1Q96JA1 1093 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 MAGEB18Q96M61 343 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 SUV39H2Q9H5I1 410 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 DCDC2Q9UHG0 476 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 FNDC3AQ9Y2H6 1198 aaKnown RBP16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 RAI2Q9Y5P3 530 aa16.36■□□□□ 0.21
PDLIM1-201ENST00000329399 IGLON5A6NGN9 336 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 C2orf81A6NN90 581 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 TRAFD1O14545 582 aaPredicted RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 COPEO14579 308 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 FAM107AO95990 144 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 PAK4O96013 591 aaPredicted RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 MPOP05164 745 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 GSTA1P08263 222 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 ITGA2BP08514 1039 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CD59P13987 128 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 GRIA4P48058 902 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CLDN2P57739 230 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 TAF1AQ15573 450 aaPredicted RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 HSP90AA5PQ58FG0 334 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 RGS9BPQ6ZS82 235 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 STRA8Q7Z7C7 330 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 SPATS2Q86XZ4 545 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 NDUFAF2Q8N183 169 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 MDM1Q8TC05 714 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CHMP6Q96FZ7 201 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 RTKNQ9BST9 563 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 NSRP1Q9H0G5 558 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 VPS11Q9H270 941 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 RHOJQ9H4E5 214 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 AASDHPPTQ9NRN7 309 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.35■□□□□ 0.218e-8■■■□□ 17.7
PDLIM1-201ENST00000329399 CORO1CQ9ULV4 474 aaPredicted RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 PCDHGC4Q9Y5F7 938 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CEP295Q9C0D2 2601 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 ANKRD66B4E2M5 251 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 AP1G1O43747 822 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 RFPL1O75677 317 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 ASMTLO95671 621 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CRHR1P34998 444 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CTSKP43235 329 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 SERPINB8P50452 374 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 SEPT6Q14141 434 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 CNGA3Q16281 694 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 HHATQ5VTY9 493 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 NEPROQ6NW34 567 aa16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 ESRP1Q6NXG1 681 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-201ENST00000329399 RABEPKQ7Z6M1 372 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms