RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 AVPR1BP47901 424 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 CAMK1DQ8IU85 385 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 MTERF3Q96E29 417 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 BTNL10A8MVZ5 291 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 RNF225M0QZC1 329 aaPredicted RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 AZIN1O14977 448 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 MMP20O60882 483 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 RFPL2O75678 378 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 TIMP1P01033 207 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 LDLRP01130 860 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 SLC6A2P23975 617 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.41□□□□□ -0.26
RFFL-201ENST00000315249 C16orf70Q9BSU1 422 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 SEMA3GQ9NS98 782 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 ADGRA3Q8IWK6 1321 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 DHX15O43143 795 aaKnown RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 PROCP04070 461 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 CCND1P24385 295 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 TAS2R41P59536 307 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 LDLRAD1Q5T700 205 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 RPAINQ86UA6 219 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 KCT2Q8NC54 265 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 DTNBP1Q96EV8 351 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 TSSK3Q96PN8 268 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 ELL3Q9HB65 397 aaPredicted RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 RXFP1Q9HBX9 757 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 DDX28Q9NUL7 540 aaKnown RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 CYP8B1Q9UNU6 501 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 ACTL7BQ9Y614 415 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 ALADP13716 330 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 TMEM154Q6P9G4 183 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 PNPT1Q8TCS8 783 aaKnown RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 FAM124BQ9H5Z6 455 aaPredicted RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 MRPS30Q9NP92 439 aaKnown RBP13.41□□□□□ -0.26
RFFL-201ENST00000315249 HCN3Q9P1Z3 774 aa13.41□□□□□ -0.26
RFFL-201ENST00000315249 DEAF1O75398 565 aaPredicted RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 ZMPSTE24O75844 475 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 FAM155BO75949 473 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 NMBRP28336 390 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 DGKKQ5KSL6 1271 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 C17orf99Q6UX52 265 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 NAPRTQ6XQN6 538 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 DDX18Q9NVP1 670 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 COL1A1P02452 1464 aaPredicted RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 hCG_2014768A0A024R1R8 64 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 COL6A1P12109 1028 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 FGFR3P22607 806 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 RPL6Q02878 288 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 ADAMTS15Q8TE58 950 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 ANAPC2Q9UJX6 822 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 SNRPB2P08579 225 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 SOX6P35712 828 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 SMPDL3BQ92485 455 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 MFSD3Q96ES6 412 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 APOLD1Q96LR9 279 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 TCRBV21S2A2A0A5A6 115 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 BCLAF3A2AJT9 711 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 C9J4A7 227 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 MTX2O75431 263 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 KLF8O95600 359 aaPredicted RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 TRBC1P01850 177 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 NQO1P15559 274 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 HSPA13P48723 471 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 PLEKHG4Q58EX7 1191 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 PIWIL2Q8TC59 973 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 BRSK1Q8TDC3 778 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 FNIP1Q8TF40 1166 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 NOL4O94818 638 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 HNRNPDQ14103 355 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 SIDT2Q8NBJ9 832 aaKnown RBP13.4□□□□□ -0.26
RFFL-201ENST00000315249 GDPD5Q8WTR4 605 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 STK32AQ8WU08 396 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 NCSTNQ92542 709 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 RNFT2Q96EX2 444 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 TMEM79Q9BSE2 394 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 EXD2Q9NVH0 621 aa13.4□□□□□ -0.26
RFFL-201ENST00000315249 BMP7P18075 431 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 RPL10P27635 214 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 CSTF2P33240 577 aaKnown RBP eCLIP13.39□□□□□ -0.27
RFFL-201ENST00000315249 VHLP40337 213 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 CPTPQ5TA50 214 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 MLIPQ5VWP3 458 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 FBXL22Q6P050 247 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 SLC43A3Q8NBI5 491 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 DNASE1L2Q92874 299 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 TCAF1Q9Y4C2 921 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 C15orf38-AP3S2A0A0A6YYH1 394 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A9O60656 530 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 STK16O75716 305 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A6P19224 532 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A1P22309 533 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A4P22310 534 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A3P35503 534 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 UGT1A5P35504 534 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 NSG1P42857 185 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 PTSQ03393 145 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 SAMD4BQ5PRF9 694 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 PDE12Q6L8Q7 609 aaKnown RBP13.39□□□□□ -0.27
RFFL-201ENST00000315249 DEF8Q6ZN54 512 aa13.39□□□□□ -0.27
RFFL-201ENST00000315249 PIWIL4Q7Z3Z4 852 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms