RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RYBPQ8N488 228 aaPredicted RBP16.72■□□□□ 0.27
CPSF4-201ENST00000292476 CPA6Q8N4T0 437 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 ACVR1CQ8NER5 493 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 OR13J1Q8NGT2 312 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 RP9Q8TA86 221 aaKnown RBP16.72■□□□□ 0.27
CPSF4-201ENST00000292476 SPDL1Q96EA4 605 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 CCDC126Q96EE4 140 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 ZNF641Q96N77 438 aaPredicted RBP16.72■□□□□ 0.27
CPSF4-201ENST00000292476 LRRC3BQ96PB8 259 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 SERPINI1Q99574 410 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 ECSITQ9BQ95 431 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 MRPL57Q9BQC6 102 aaKnown RBP16.72■□□□□ 0.27
CPSF4-201ENST00000292476 MRPL46Q9H2W6 279 aaKnown RBP16.72■□□□□ 0.27
CPSF4-201ENST00000292476 MAGEE1Q9HCI5 957 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 RUVBL2Q9Y230 463 aaKnown RBP16.72■□□□□ 0.27
CPSF4-201ENST00000292476 PCDHB9Q9Y5E1 797 aa16.72■□□□□ 0.27
CPSF4-201ENST00000292476 CUL9Q8IWT3 2517 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 C19orf67A6NJJ6 358 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 TK2O00142 265 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 TNFRSF10AO00220 468 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 PFDN6O15212 129 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 HTRA2O43464 458 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 PSMA3P25788 255 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 ARNTP27540 789 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 SATB1Q01826 763 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 TBL3Q12788 808 aaKnown RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 CUL3Q13618 768 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 ASTLQ6HA08 431 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 SDCCAG8Q86SQ7 713 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 DEFB107AQ8IZN7 70 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 FSTL5Q8N475 847 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 OR6P1Q8NGX9 317 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 MAPK15Q8TD08 544 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 FAR2Q96K12 515 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 SCYL1Q96KG9 808 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 RPL10LQ96L21 214 aaKnown RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 GPR78Q96P69 363 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 FAM83CQ9BQN1 747 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 NLE1Q9NVX2 485 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 SLC2A6Q9UGQ3 507 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 BCAP29Q9UHQ4 241 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 EVLQ9UI08 416 aaPredicted RBP16.71■□□□□ 0.27
CPSF4-201ENST00000292476 PPM1HQ9ULR3 514 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 ERVW-1Q9UQF0 538 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 CDYLQ9Y232 598 aa16.71■□□□□ 0.27
CPSF4-201ENST00000292476 CCDC78A2IDD5 438 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 TRPC5OSA6NMA1 111 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 E9PBE3 544 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 BUD23O43709 281 aaKnown RBP16.7■□□□□ 0.26
CPSF4-201ENST00000292476 KLHL41O60662 606 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 PIGNO95427 931 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 PDHA1P08559 390 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 CISD3P0C7P0 127 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 TFEBP19484 476 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 MPSTP25325 297 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 PIK3R1P27986 724 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 PPARGP37231 505 aaPredicted RBP16.7■□□□□ 0.26
CPSF4-201ENST00000292476 ABCG1P45844 678 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 CLCN5P51795 746 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 ST8SIA6P61647 398 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 FCHO2Q0JRZ9 810 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 CCNIQ14094 377 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 EIF4HQ15056 248 aaKnown RBP16.7■□□□□ 0.26
CPSF4-201ENST00000292476 ARL13AQ5H913 290 aaPredicted RBP16.7■□□□□ 0.26
CPSF4-201ENST00000292476 DGKKQ5KSL6 1271 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 ZNF470Q6ECI4 717 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 TMEM154Q6P9G4 183 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 SLC41A1Q8IVJ1 513 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 KBTBD2Q8IY47 623 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 NAT16Q8N8M0 369 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 KDM1BQ8NB78 822 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 GPR150Q8NGU9 434 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 KCTD4Q8WVF5 259 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 GATA6Q92908 595 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 HDAC10Q969S8 669 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 ELSPBP1Q96BH3 223 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 RSPRY1Q96DX4 576 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 CPSF2Q9P2I0 782 aaKnown RBP16.7■□□□□ 0.26
CPSF4-201ENST00000292476 DEC1Q9P2X7 70 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 FBXO5Q9UKT4 447 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 POMPQ9Y244 141 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 VPS9D1Q9Y2B5 631 aa16.7■□□□□ 0.26
CPSF4-201ENST00000292476 C2CD4DB7Z1M9 353 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 LOC730098B7Z3J9 87 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 CASQ2O14958 399 aaPredicted RBP16.69■□□□□ 0.26
CPSF4-201ENST00000292476 PHGDHO43175 533 aaKnown RBP16.69■□□□□ 0.26
CPSF4-201ENST00000292476 GRID2O43424 1007 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 ATP5F1P24539 256 aaPredicted RBP16.69■□□□□ 0.26
CPSF4-201ENST00000292476 SLC1A2P43004 574 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 CTSOP43234 321 aaPredicted RBP16.69■□□□□ 0.26
CPSF4-201ENST00000292476 POLR2LP62875 67 aaKnown RBP16.69■□□□□ 0.26
CPSF4-201ENST00000292476 AFTPHQ6ULP2 937 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 NUDT18Q6ZVK8 323 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 TSPAN17Q96FV3 270 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 LRIG1Q96JA1 1093 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 OR52B2Q96RD2 323 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 TTC1Q99614 292 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 TNKS2Q9H2K2 1166 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 NCKIPSDQ9NZQ3 722 aa16.69■□□□□ 0.26
CPSF4-201ENST00000292476 PDP2Q9P2J9 529 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms