RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CCDC3Q9BQI4 270 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 C1QTNF1Q9BXJ1 281 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 NLNQ9BYT8 704 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 ANKRA2Q9H9E1 313 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 IL17RBQ9NRM6 502 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 ZDHHC18Q9NUE0 388 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 ASTN1O14525 1302 aa10.4□□□□□ -0.75
VCL-201ENST00000211998 POMCP01189 267 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 OR1E1P30953 314 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 RPL7AP62424 266 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 CTBP1Q13363 440 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 TIGD6Q17RP2 521 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 PLEKHG4Q58EX7 1191 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 HYIQ5T013 277 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 TNFRSF25Q93038 417 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 S100PBPQ96BU1 408 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 INTS10Q9NVR2 710 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 IQGAP1P46940 1657 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 FUOMA2VDF0 154 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 STX16-NPEPL1H3BU86 382 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 RFXANKO14593 260 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 STX16O14662 325 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 OR56A5P0C7T3 313 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 CSH1P0DML2 217 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 CSH2P0DML3 217 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 TUBP50607 506 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 POLR2JP52435 117 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 NKX2-5P52952 324 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 AP2S1P53680 142 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 PCBP1Q15365 356 aaKnown RBP eCLIP10.39□□□□□ -0.752e-14■■■□□ 15.9
VCL-201ENST00000211998 NPTX1Q15818 432 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 SYT16Q17RD7 645 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 HSD17B12Q53GQ0 312 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 RAP1GAP2Q684P5 730 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 ULK3Q6PHR2 472 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 ZNF420Q8TAQ5 688 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 PANX1Q96RD7 426 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 COMMD3Q9UBI1 195 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 TRIM3O75382 744 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 SLC2A2P11168 524 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 CYP2C18P33260 490 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 SMIM11AP58511 58 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 BTG3Q14201 252 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 GALNT3Q14435 633 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 PRKD1Q15139 912 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 FAM171A1Q5VUB5 890 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 CXorf57Q6NSI4 855 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 TLDC1Q6P9B6 456 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 APTXQ7Z2E3 356 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 SPATA19Q7Z5L4 167 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 GPR180Q86V85 440 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 SLC37A3Q8NCC5 494 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 OR52L1Q8NGH7 329 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 CPT1BQ92523 772 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 ROPN1LQ96C74 230 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 UROC1Q96N76 676 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 WDR6Q9NNW5 1121 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 POLR3BQ9NW08 1133 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 PAQR5Q9NXK6 330 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 ANGPT4Q9Y264 503 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 GRIP1Q9Y3R0 1128 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 MFHAS1Q9Y4C4 1052 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 POLR3HQ9Y535 204 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 LACTBL1A8MY62 500 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 E5RJQ4 531 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 HMGB3O15347 200 aaKnown RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 ENDOD1O94919 500 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 BTN3A2P78410 334 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 USP50Q70EL3 339 aaPredicted RBP10.39□□□□□ -0.75
VCL-201ENST00000211998 OR52K2Q8NGK3 314 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 BPIFB1Q8TDL5 484 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 POPDC2Q9HBU9 364 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 CORO2BQ9UQ03 480 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 PREX1Q8TCU6 1659 aa10.39□□□□□ -0.75
VCL-201ENST00000211998 IRGMA1A4Y4 181 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 C9JVG2 144 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 WNT10BO00744 389 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 ACOX3O15254 700 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 ULK1O75385 1050 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 SCGNO76038 276 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 CCNDBP1O95273 360 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 RPS3P23396 243 aaKnown RBP eCLIP10.38□□□□□ -0.755e-7■■■■□ 19.7
VCL-201ENST00000211998 RELAQ04206 551 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 SGCGQ13326 291 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.38□□□□□ -0.75
VCL-201ENST00000211998 FAM92BQ6ZTR7 304 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 DEFB128Q7Z7B8 93 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 UNC93AQ86WB7 457 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 FAM20CQ8IXL6 584 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PACRGLQ8N7B6 248 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 TEX47Q8TBZ9 253 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 EDEM1Q92611 657 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 LENG9Q96B70 501 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 SLC39A3Q9BRY0 314 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 OSGEPL1Q9H4B0 414 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PTBP2Q9UKA9 531 aaKnown RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 OAZ3Q9UMX2 235 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 MYOCOSA0A1B0GUC4 107 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 NOL4O94818 638 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PCDH8O95206 1070 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms