RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Chsy3Q5DTK1 884 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Glis1Q8K1M4 789 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Prdm15E9Q8T2 1174 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Gm20509G3UZF1 325 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 MazP56671 477 aaKnown RBP11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Smim24Q0VG18 120 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Acsbg2Q2XU92 667 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Thap1Q8CHW1 210 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Fam83aQ8K2P2 436 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Dlg2Q91XM9 852 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 BniplQ99JU7 328 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Pak1ip1Q9DCE5 382 aaKnown RBP11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Slc7a5Q9Z127 512 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ddx60E9PZQ1 1711 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Olfr1305A2AVW3 312 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Pgm2A2CEK3 580 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Col28a1Q2UY11 1141 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Vps51Q3UVL4 782 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Serpina3fQ80X76 445 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Spon1Q8VCC9 807 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cybrd1Q925G2 290 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Olfr625-ps1A0A140T8L4 321 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Itga11P61622 1188 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Pfkfb2P70265 519 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Rbm34Q8C5L7 375 aaKnown RBP11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Sapcd1Q9CY86 146 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Pbld1Q9DCG6 288 aa11.89□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cbfa2t3O54972 620 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Clcn7O70496 803 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 LdhcP00342 332 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Rcn3Q8BH97 328 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cpsf7Q8BTV2 471 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Vmn1r218Q8R261 298 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Olfr853Q8VGG6 305 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Mettl15Q9DCL4 406 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Smim10l2aA0A0B4J1F8 78 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Spaca5A2AE20 160 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ppp3caP63328 521 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Npy2rP97295 381 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Kcnd1Q03719 651 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Slc16a10Q3U9N9 512 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Usf2Q64705 346 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Slc39a13Q8BZH0 361 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Slc5a3Q9JKZ2 718 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 VapbQ9QY76 243 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Baz2bA2AUY4 2123 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Gm11027G8JL69 66 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Sod3O09164 251 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cd4P06332 457 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Lipo3Q3UT41 399 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Opa3Q505D7 179 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ankrd13bQ5F259 626 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Gm11437Q5QR91 290 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Zdhhc20Q5Y5T1 380 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Tprg1Q8CB49 279 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Adgrf1Q8VEC3 908 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Slc3a1Q91WV7 685 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 HnrnpabQ99020 285 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Fbxo47A2A6H3 451 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 AboP38649 332 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 GaaP70699 953 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Col6a2Q02788 1034 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Prom2Q3UUY6 835 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Scube1Q6NZL8 1018 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Sytl5Q80T23 753 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Pum1Q80U78 1189 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Dennd1cQ8CFK6 786 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Memo1Q91VH6 297 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cpt1bQ924X2 772 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Mmtag2Q99LX5 260 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Itsn1Q9Z0R4 1714 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ercc6l2Q9JIM3 1537 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cntnap5cQ0V8T7 1305 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Zfp990B1AVN5 605 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Anxa2P07356 339 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Sox8Q04886 464 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Mpzl3Q3V3F6 237 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ago1Q8CJG1 857 aaKnown RBP11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Sec14l2Q99J08 403 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ankra2Q99PE2 312 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Amd2D3Z6H8 334 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Vmn2r42O35192 852 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Amd1P0DMN7 334 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 BpgmP15327 259 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Tuba4aP68368 448 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 UrodP70697 367 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Sec23aQ01405 765 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Zswim3Q8CFL8 695 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 KmoQ91WN4 479 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Fam217bA2AJW5 387 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Fam151bD3YUE4 279 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Zfp712E9PXJ4 705 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Foxn2E9Q7L6 429 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Zfp809G3X9G7 402 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Ccnb2P30276 398 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Cyp2f2P33267 491 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Gm8773Q3UQ24 132 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Hmbox1Q8BJA3 419 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 Nkiras2Q9CR56 191 aa11.88□□□□□ -0.51
Trim56-201ENSMUST00000054384 MycsQ9Z304 431 aa11.88□□□□□ -0.51
Retrieved 100 of 22,080 RNA–protein pairs in 23.3 ms