RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FCAMRQ8WWV6 532 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 TAAR8Q969N4 342 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 IGSF8Q969P0 613 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 HVCN1Q96D96 273 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 ZNF354BQ96LW1 612 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 ACOX2Q99424 681 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 TFB2MQ9H5Q4 396 aaKnown RBP3.9□□□□□ -1.79
CD44-239ENST00000639002 ZNF624Q9P2J8 865 aaPredicted RBP3.9□□□□□ -1.79
CD44-239ENST00000639002 KLHL20Q9Y2M5 609 aa3.9□□□□□ -1.79
CD44-239ENST00000639002 A0A1W2PP11 408 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 BLOC1S5-TXNDC5H3BN57 136 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 IFRD1O00458 451 aaPredicted RBP3.89□□□□□ -1.79
CD44-239ENST00000639002 EIF3DO15371 548 aaKnown RBP eCLIP3.89□□□□□ -1.79
CD44-239ENST00000639002 TNFSF14O43557 240 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 INHBAP08476 426 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 HSD3B1P14060 373 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 CPOXP36551 454 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 TERF1P54274 439 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 KRTAP10-3P60369 221 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 VAMP2P63027 116 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 DRAP1Q14919 205 aaPredicted RBP3.89□□□□□ -1.79
CD44-239ENST00000639002 GPR68Q15743 365 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 ZC2HC1BQ5TFG8 222 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 DPPA4Q7L190 304 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 APLFQ8IW19 511 aaPredicted RBP3.89□□□□□ -1.79
CD44-239ENST00000639002 CCDC13Q8IYE1 715 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 ANKRD42Q8N9B4 389 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 MAPK1IP1LQ8NDC0 245 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 THAP6Q8TBB0 222 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 FSD1Q9BTV5 496 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 INTS6Q9UL03 887 aaKnown RBP3.89□□□□□ -1.79
CD44-239ENST00000639002 SARDHQ9UL12 918 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 TBX20Q9UMR3 447 aa3.89□□□□□ -1.79
CD44-239ENST00000639002 FAM237AA0A1B0GTK4 181 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 FAM90A26D6RGX4 464 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 EXTL3O43909 919 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 PCDH7O60245 1069 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 CD48P09326 243 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 ERVK-10P10266 1014 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 COG7P83436 770 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 TAF12Q16514 161 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 CXorf66Q5JRM2 361 aaPredicted RBP3.88□□□□□ -1.79
CD44-239ENST00000639002 DCST1Q5T197 706 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 SFMBT2Q5VUG0 894 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 FAM53AQ6NSI3 398 aaPredicted RBP3.88□□□□□ -1.79
CD44-239ENST00000639002 ANO5Q75V66 913 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 MAP7D3Q8IWC1 876 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 STPG4Q8N801 248 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 CNBD1Q8NA66 436 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 RBM15BQ8NDT2 890 aaKnown RBP3.88□□□□□ -1.79
CD44-239ENST00000639002 TMEM190Q8WZ59 177 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 TRIM63Q969Q1 353 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 KIF1BPQ96EK5 621 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 TMEM47Q9BQJ4 181 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 MOV10L1Q9BXT6 1211 aaKnown RBP3.88□□□□□ -1.79
CD44-239ENST00000639002 KIF9Q9HAQ2 790 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 ASAH2Q9NR71 780 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.88□□□□□ -1.79
CD44-239ENST00000639002 POLG2Q9UHN1 485 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 FBXL2Q9UKC9 423 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 KCNK7Q9Y2U2 307 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 AAR2Q9Y312 384 aaKnown RBP3.88□□□□□ -1.79
CD44-239ENST00000639002 DGKBQ9Y6T7 804 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 CAPN7Q9Y6W3 813 aa3.88□□□□□ -1.79
CD44-239ENST00000639002 LRRC53A6NM62 1247 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 TSPAN4O14817 238 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 WISP2O76076 250 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 BAG4O95429 457 aaKnown RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 F9P00740 461 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 RNF224P0DH78 156 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 UGT1A1P22309 533 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 ABCD1P33897 745 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 PIP4K2AP48426 406 aaPredicted RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 AMPHP49418 695 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 HSD17B4P51659 736 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 TBX2Q13207 712 aaPredicted RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 TRPC3Q13507 836 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 GSTA3Q16772 222 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 KRTCAP3Q53RY4 240 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 TECRLQ5HYJ1 363 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 FAM69AQ5T7M9 428 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 ZNF704Q6ZNC4 412 aaPredicted RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 C15orf39Q6ZRI6 1047 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 CACNA2D4Q7Z3S7 1137 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 TRPT1Q86TN4 253 aaKnown RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 ADSSL1Q8N142 457 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 ADAD2Q8NCV1 583 aaKnown RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 PSPC1Q8WXF1 523 aaKnown RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 TM9SF4Q92544 642 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 HTRA1Q92743 480 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 RNF125Q96EQ8 232 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 EIF2AK1Q9BQI3 630 aaKnown RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 PCGF1Q9BSM1 259 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 UPF2Q9HAU5 1272 aaKnown RBP3.87□□□□□ -1.79
CD44-239ENST00000639002 PCDHB16Q9NRJ7 776 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 TCP11L1Q9NUJ3 509 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 ABI3Q9P2A4 366 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 PRAG1Q86YV5 1406 aa3.87□□□□□ -1.79
CD44-239ENST00000639002 COL2A1P02458 1487 aaPredicted RBP3.86□□□□□ -1.79
CD44-239ENST00000639002 NR5A2O00482 541 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms