RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SEC14L4Q9UDX3 406 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 LAMP5Q9UJQ1 280 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PCOLCE2Q9UKZ9 415 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PSAT1Q9Y617 370 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 C1orf167Q5SNV9 1468 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM240BA0A1B0GVZ2 78 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM149AA5PLN7 773 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 LINC00587B1AMM8 73 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM20BO75063 409 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 RPS6KA4O75676 772 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PRKAR1AP10644 381 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PVALBP20472 110 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GLRA2P23416 452 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 G0S2P27469 103 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 ACADLP28330 430 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CREB5Q02930 508 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GRIK2Q13002 908 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TIMM50Q3ZCQ8 353 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GLRA4Q5JXX5 417 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 HECTD3Q5T447 861 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CROCCQ5TZA2 2017 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SLFN12LQ6IEE8 588 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TCEAL6Q6IPX3 200 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GJB7Q6PEY0 223 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 DRICH1Q6PGQ1 229 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TMEM65Q6PI78 240 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 CNSTQ6PJW8 725 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 RAB11FIP2Q7L804 512 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 R3HCC1LQ7Z5L2 792 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TXNDC5Q8NBS9 432 aaKnown RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TMIEQ8NEW7 156 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 NR4A3Q92570 626 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PTP4A1Q93096 173 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAF2Q96CS3 445 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM129BQ96TA1 746 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 DPCDQ9BVM2 203 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 FAM49BQ9NUQ9 324 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 PIM2Q9P1W9 311 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 SEPT9Q9UHD8 586 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-216ENST00000637968 GTF2IRD1Q9UHL9 959 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 TMX2Q9Y320 296 aa5.72□□□□□ -1.49
SCN1A-216ENST00000637968 DENND3A2RUS2 1198 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 SOCS2O14508 198 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 SLC22A2O15244 555 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 INPP4BO15327 924 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 BRINP1O60477 761 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 CPNE6O95741 557 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 GSTM5P46439 218 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 HNMTP50135 292 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 RAB5BP61020 215 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 HSF2Q03933 536 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 PICALMQ13492 652 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 GCKRQ14397 625 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 ATF7IP2Q5U623 682 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 XRRA1Q6P2D8 792 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 PRMT9Q6P2P2 845 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 FOXR2Q6PJQ5 311 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF852Q6ZMS4 543 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 C12orf45Q8N5I9 185 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-216ENST00000637968 TTLL6Q8N841 843 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 KDM1BQ8NB78 822 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 OR9Q1Q8NGQ5 310 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 NDNFQ8TB73 568 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 TANKQ92844 425 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 GJA10Q969M2 543 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 EXOSC8Q96B26 276 aaKnown RBP5.71□□□□□ -1.49
SCN1A-216ENST00000637968 PPP3R2Q96LZ3 170 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 BBS4Q96RK4 519 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.71□□□□□ -1.49
SCN1A-216ENST00000637968 UNC93B1Q9H1C4 597 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 MED28Q9H204 178 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 PCDH9Q9HC56 1237 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 EVA1BQ9NVM1 165 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 THUMPD1Q9NXG2 353 aaKnown RBP5.71□□□□□ -1.49
SCN1A-216ENST00000637968 FIS1Q9Y3D6 152 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 LYVE1Q9Y5Y7 322 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 CSNK1G3Q9Y6M4 447 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 CRB1P82279 1406 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 CAMSAP1Q5T5Y3 1602 aa5.71□□□□□ -1.49
SCN1A-216ENST00000637968 LINC00862A6NCI5 91 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 PRR23D1E9PI22 279 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-216ENST00000637968 H0YAE9 185 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 MRASO14807 208 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 PPEF1O14829 653 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-216ENST00000637968 ULK1O75385 1050 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 ALDH1A2O94788 518 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 SNAPINO95295 136 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 PGLSO95336 258 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 FTH1P02794 183 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 PGRP06401 933 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 PRR23D2P0DMB1 279 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF250P15622 560 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 CHMP24386 653 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 UGT2B10P36537 528 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 UGT2B15P54855 530 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 BMPR2Q13873 1038 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 FASTKD3Q14CZ7 662 aaKnown RBP5.71□□□□□ -1.5
SCN1A-216ENST00000637968 SGCAQ16586 387 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 BCL7AQ4VC05 210 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 N4BP2L1Q5TBK1 243 aaPredicted RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms