RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 FAM81BQ96LP2 452 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 SMAD5Q99717 465 aaKnown RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 PDCL3Q9H2J4 239 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 KCTD5Q9NXV2 234 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 GPR83Q9NYM4 423 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 CPNE7Q9UBL6 633 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 APEX2Q9UBZ4 518 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 CD84Q9UIB8 345 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 OSGIN2Q9Y236 505 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 KCNK6Q9Y257 313 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 FARSAQ9Y285 508 aaKnown RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 COPG1Q9Y678 874 aaKnown RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 ABCA2Q9BZC7 2435 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 A0A1B0GTL3 188 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 SSU72P8A0A1W2PR75 194 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 TTC24A2A3L6 582 aaPredicted RBP14.37□□□□□ -0.11
CLN3-249ENST00000636685 LILRA5A6NI73 299 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 WASH4PA8MWX3 477 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 PPP1R3GB7ZBB8 358 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 FOXN3O00409 490 aaPredicted RBP14.37□□□□□ -0.11
CLN3-249ENST00000636685 PRAMEF11O60813 436 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 TMEM63AO94886 807 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 SPTBP11277 2137 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 LPOP22079 712 aaPredicted RBP14.37□□□□□ -0.11
CLN3-249ENST00000636685 LHCGRP22888 699 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 ITGA3P26006 1051 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 TESK1Q15569 626 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 CRB2Q5IJ48 1285 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 TMCO4Q5TGY1 634 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 ISM2Q6H9L7 571 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 KLHL10Q6JEL2 608 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 ARCQ7LC44 396 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 CHST15Q7LFX5 561 aaPredicted RBP14.37□□□□□ -0.11
CLN3-249ENST00000636685 UMODL1-AS1Q8N2C9 162 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 GPT2Q8TD30 523 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 INPP5DQ92835 1189 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 DHTKD1Q96HY7 919 aaPredicted RBP14.37□□□□□ -0.11
CLN3-249ENST00000636685 GSDMAQ96QA5 445 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 ZNHIT2Q9UHR6 403 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 B3GNT3Q9Y2A9 372 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 SLC30A1Q9Y6M5 507 aa14.37□□□□□ -0.11
CLN3-249ENST00000636685 ANKHD1Q8IWZ3 2542 aaKnown RBP14.37□□□□□ -0.11
CLN3-249ENST00000636685 A0A0U1RQS6 177 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 TOX3O15405 576 aaPredicted RBP14.36□□□□□ -0.11
CLN3-249ENST00000636685 PALMO75781 387 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 SNRPB2P08579 225 aaKnown RBP14.36□□□□□ -0.11
CLN3-249ENST00000636685 SCNN1BP51168 640 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 HDAC4P56524 1084 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 CACHD1Q5VU97 1274 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 FAM69BQ5VUD6 431 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 ADAMTSL4Q6UY14 1074 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 TSPAN33Q86UF1 283 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 GLIS1Q8NBF1 620 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 ST6GALNAC3Q8NDV1 305 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 UBE2Q2Q8WVN8 375 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 CELF6Q96J87 481 aaKnown RBP14.36□□□□□ -0.11
CLN3-249ENST00000636685 BARD1Q99728 777 aaKnown RBP14.36□□□□□ -0.11
CLN3-249ENST00000636685 HERPUD2Q9BSE4 406 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 ABCG8Q9H221 673 aa14.36□□□□□ -0.11
CLN3-249ENST00000636685 NIPBLQ6KC79 2804 aaeCLIP14.36□□□□□ -0.11
CLN3-249ENST00000636685 CREB3O43889 395 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 UBXN7O94888 489 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 ASMTLO95671 621 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 ACP5P13686 325 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 F3P13726 295 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 AMD1P17707 334 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 SDC4P31431 198 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 UBE2IP63279 158 aaKnown RBP14.35□□□□□ -0.11
CLN3-249ENST00000636685 DPTQ07507 201 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 STIM1Q13586 685 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 TAF3Q5VWG9 929 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 ZNF517Q6ZMY9 492 aaPredicted RBP14.35□□□□□ -0.11
CLN3-249ENST00000636685 FAM92BQ6ZTR7 304 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 TECPR1Q7Z6L1 1165 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 LZTR1Q8N653 840 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 JOSD2Q8TAC2 188 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 FAM172AQ8WUF8 416 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 CPA5Q8WXQ8 436 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 KLHL6Q8WZ60 621 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 AGAP2Q99490 1192 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 CINPQ9BW66 212 aaPredicted RBP14.35□□□□□ -0.11
CLN3-249ENST00000636685 ILKAPQ9H0C8 392 aaPredicted RBP14.35□□□□□ -0.11
CLN3-249ENST00000636685 LRRC19Q9H756 370 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 PDE7BQ9NP56 450 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 COPG2Q9UBF2 871 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 PCDHGC4Q9Y5F7 938 aa14.35□□□□□ -0.11
CLN3-249ENST00000636685 CNTRLQ7Z7A1 2325 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 KIR2DS5A0A0G2JLQ3 304 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 A0A0G2JNG1 304 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 NPIPB15A6NHN6 443 aaPredicted RBP14.34□□□□□ -0.11
CLN3-249ENST00000636685 KIR2DS3K7RE56 304 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 DNAJC6O75061 913 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 CPP00450 1065 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 SLC2A4P14672 509 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 GLRBP48167 497 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 PAPOLAP51003 745 aaKnown RBP14.34□□□□□ -0.11
CLN3-249ENST00000636685 STX17P56962 302 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 TUBB3Q13509 450 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 KCNAB1Q14722 419 aa14.34□□□□□ -0.11
CLN3-249ENST00000636685 KIR2DS5Q14953 304 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms