RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 RCBTB1Q8NDN9 531 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 OR10G6Q8NH81 332 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 TEFMQ96QE5 360 aaKnown RBP18.28■□□□□ 0.52
CLN3-241ENST00000635861 ADGRE3Q9BY15 652 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 SARS2Q9NP81 518 aaKnown RBP18.28■□□□□ 0.52
CLN3-241ENST00000635861 BSNQ9UPA5 3926 aa18.28■□□□□ 0.52
CLN3-241ENST00000635861 C1orf232A0A0U1RR37 186 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 ANKRD66B4E2M5 251 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 GPR89AB7ZAQ6 455 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 DNAJC6O75061 913 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 ASMTLO95671 621 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 GPR89BP0CG08 455 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 FGF3P11487 239 aaPredicted RBP18.27■□□□□ 0.52
CLN3-241ENST00000635861 CCL4P13236 92 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 GJC1P36383 396 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 SPINT3P49223 89 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 ATP13A4Q4VNC1 1196 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 WDR74Q6RFH5 385 aaPredicted RBP18.27■□□□□ 0.52
CLN3-241ENST00000635861 TRIM74Q86UV6 250 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 PQLC3Q8N755 202 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 LPCAT1Q8NF37 534 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 SLC37A2Q8TED4 501 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 AHCYL2Q96HN2 611 aaKnown RBP18.27■□□□□ 0.52
CLN3-241ENST00000635861 AGAP2Q99490 1192 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 SLC38A3Q99624 504 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 HERPUD2Q9BSE4 406 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 MLPHQ9BV36 600 aaPredicted RBP18.27■□□□□ 0.52
CLN3-241ENST00000635861 EPB41L1Q9H4G0 881 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 FAM83DQ9H4H8 585 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 PLEKHM1Q9Y4G2 1056 aa18.27■□□□□ 0.52
CLN3-241ENST00000635861 A0A0U1RQS6 177 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 OR5K4A6NMS3 321 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 CASP14P31944 242 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 CSF2RBP32927 897 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 EPHA4P54764 986 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 IFI35P80217 286 aaPredicted RBP18.26■□□□□ 0.51
CLN3-241ENST00000635861 GBE1Q04446 702 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 PPIDQ08752 370 aaKnown RBP18.26■□□□□ 0.51
CLN3-241ENST00000635861 NIPAL4Q0D2K0 466 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 MARK2Q7KZI7 788 aaKnown RBP18.26■□□□□ 0.51
CLN3-241ENST00000635861 EXD3Q8N9H8 876 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 CCNYQ8ND76 341 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 RNF157Q96PX1 679 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 SMIM14Q96QK8 99 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.26■□□□□ 0.51
CLN3-241ENST00000635861 CARD9Q9H257 536 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 RAD18Q9NS91 495 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 DTLQ9NZJ0 730 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 NFKBIL1Q9UBC1 381 aaPredicted RBP18.26■□□□□ 0.51
CLN3-241ENST00000635861 ZNHIT2Q9UHR6 403 aa18.26■□□□□ 0.51
CLN3-241ENST00000635861 CNOT6Q9ULM6 557 aaKnown RBP18.26■□□□□ 0.51
CLN3-241ENST00000635861 SSU72P8A0A1W2PR75 194 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 INPP4BO15327 924 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 MAP3K6O95382 1288 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 KDELR1P24390 212 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 CLCNKAP51800 687 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 TAS2R40P59535 323 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 HHEXQ03014 270 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 SRSF6Q13247 344 aaKnown RBP18.25■□□□□ 0.51
CLN3-241ENST00000635861 TRIM14Q14142 442 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 QPCTQ16769 361 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 NKAIN2Q5VXU1 208 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 PDPK2PQ6A1A2 396 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 SLC9B2Q86UD5 537 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 VASH2Q86V25 355 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 NKD1Q969G9 470 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 WDR24Q96S15 920 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 ZPBPQ9BS86 351 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 FAM117AQ9C073 453 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 STARD5Q9NSY2 213 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 IFNKQ9P0W0 207 aa18.25■□□□□ 0.51
CLN3-241ENST00000635861 HEMK1Q9Y5R4 338 aaPredicted RBP18.25■□□□□ 0.51
CLN3-241ENST00000635861 UBR5O95071 2799 aaPredicted RBP18.24■□□□□ 0.51
CLN3-241ENST00000635861 KIR2DS5A0A0G2JLQ3 304 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 A0A0G2JNG1 304 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 KIR2DS3K7RE56 304 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 CAPN5O15484 640 aaPredicted RBP18.24■□□□□ 0.51
CLN3-241ENST00000635861 MMP2P08253 660 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 TMEM253P0C7T8 217 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 F3P13726 295 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 CD86P42081 329 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 DCDC1P59894 354 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 SLC10A2Q12908 348 aaPredicted RBP18.24■□□□□ 0.51
CLN3-241ENST00000635861 KIR2DS5Q14953 304 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 SLC14A2Q15849 920 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 ZFYVE27Q5T4F4 411 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 DCAF12Q5T6F0 453 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 IYDQ6PHW0 289 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 CHST15Q7LFX5 561 aaPredicted RBP18.24■□□□□ 0.51
CLN3-241ENST00000635861 LYSMD3Q7Z3D4 306 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 EXTL1Q92935 676 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 SRPK1Q96SB4 655 aaKnown RBP18.24■□□□□ 0.51
CLN3-241ENST00000635861 ZMYND15Q9H091 742 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 SLC39A1Q9NY26 324 aa18.24■□□□□ 0.51
CLN3-241ENST00000635861 FADS2P1A8MWK0 482 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 AGRPO00253 132 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 SLC28A2O43868 658 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 NUAK1O60285 661 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 JCHAINP01591 159 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ATP1A1P05023 1023 aaKnown RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms