RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CCDC28BQ9BUN5 200 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 ADGRE3Q9BY15 652 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 GPR63Q9BZJ6 419 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 IL1RL2Q9HB29 575 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 MRPL17Q9NRX2 175 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 SPG21Q9NZD8 308 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 CFAP97Q9P2B7 532 aa10.57□□□□□ -0.72
CUX1-221ENST00000622516 GMPR2Q9P2T1 348 aaKnown RBP10.57□□□□□ -0.72
CUX1-221ENST00000622516 LUC7L3O95232 432 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 OGNP20774 298 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 PEX2P28328 305 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 PRDX6P30041 224 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 MRPS22P82650 360 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 RALGDSQ12967 914 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 FASTKQ14296 549 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 GRB7Q14451 532 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 C18orf21Q32NC0 220 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 LRRC73Q5JTD7 316 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 GALNT7Q86SF2 657 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 PELI3Q8N2H9 469 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 C19orf60Q96EN9 201 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 CDK15Q96Q40 435 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 HBEGFQ99075 208 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 DDX50Q9BQ39 737 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 BOCQ9BWV1 1114 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 PCDHAC1Q9H158 963 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 AKTIPQ9H8T0 292 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 MEAF6Q9HAF1 191 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 PSMD12O00232 456 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 PIP5K1BO14986 540 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 ALDOCP09972 364 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 UGT1A6P19224 532 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 UGT1A1P22309 533 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 UGT1A4P22310 534 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 CD70P32970 193 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 UGT1A3P35503 534 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 UGT1A5P35504 534 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 ARL1P40616 181 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 CTSOP43234 321 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 STK19P49842 368 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 ISLR2Q6UXK2 745 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 BNC2Q6ZN30 1099 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 FBXO39Q8N4B4 442 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 SLC22A17Q8WUG5 538 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 ZNF689Q96CS4 500 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 TRMT2BQ96GJ1 504 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 LRCH3Q96II8 777 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 ZNF184Q99676 751 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 EFCAB1Q9HAE3 211 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 HCFC1R1Q9NWW0 138 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 ARIH1Q9Y4X5 557 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 COL4A6Q14031 1691 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 E5RI56 91 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 FBP2O00757 339 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 PKMP14618 531 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 PRMT2P55345 433 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 RAD51Q06609 339 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 LAMB3Q13751 1172 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 RFTN1Q14699 578 aaPredicted RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 ZRSR2Q15696 482 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 UGT3A2Q3SY77 523 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 C16orf89Q6UX73 402 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 KLHL23Q8NBE8 558 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 STAG3L4Q8TBR4 150 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 FUBP1Q96AE4 644 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 LINGO1Q96FE5 620 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 PAWRQ96IZ0 340 aaKnown RBP10.56□□□□□ -0.72
CUX1-221ENST00000622516 ACOX2Q99424 681 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 TRIM8Q9BZR9 551 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 TUBB1Q9H4B7 451 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 CCL26Q9Y258 94 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 OR51B4Q9Y5P0 310 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 AK5Q9Y6K8 562 aa10.56□□□□□ -0.72
CUX1-221ENST00000622516 TRIM43BA6NCK2 446 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 ZBBXA8MT70 800 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 CLDN7O95471 211 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 UBTFL6P0CB48 400 aaPredicted RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 ACADSP16219 412 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 GCKP35557 465 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 SUOXP51687 545 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 HK2P52789 917 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 HK3P52790 923 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 WDR5P61964 334 aaKnown RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 FLOT2Q14254 428 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TRIP10Q15642 601 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 ZNF423Q2M1K9 1284 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 KIF19Q2TAC6 998 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 PIGGQ5H8A4 983 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 DHDDSQ86SQ9 333 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TCEAL8Q8IYN2 117 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 CMTM8Q8IZV2 173 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TTC30BQ8N4P2 665 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 BHLHE22Q8NFJ8 381 aaPredicted RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 TWIST2Q8WVJ9 160 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 PEX13Q92968 403 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 TRIM43Q96BQ3 446 aaPredicted RBP10.55□□□□□ -0.72
CUX1-221ENST00000622516 L3HYPDHQ96EM0 354 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 ALG14Q96F25 216 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 CORO1BQ9BR76 489 aa10.55□□□□□ -0.72
CUX1-221ENST00000622516 INTS10Q9NVR2 710 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms