RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PACSIN2Q9UNF0 486 aaPredicted RBP12.06□□□□□ -0.48
LIG1-217ENST00000599165 SATB2Q9UPW6 733 aa12.06□□□□□ -0.48
LIG1-217ENST00000599165 EFR3BQ9Y2G0 817 aa12.06□□□□□ -0.48
LIG1-217ENST00000599165 PRKAB1Q9Y478 270 aa12.06□□□□□ -0.48
LIG1-217ENST00000599165 LOC400499M0QZD8 3231 aa12.06□□□□□ -0.48
LIG1-217ENST00000599165 RGSL1A5PLK6 1076 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 A6NCN8 305 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 HACD1B0YJ81 288 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 B4GAT1O43505 415 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ECEL1O95672 775 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 PNLIPP16233 465 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 GLB1P16278 677 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 BPIP17213 487 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 DCDC1P59894 354 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 COPS2P61201 443 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 XRCC4Q13426 336 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 KHDC1Q4VXA5 237 aaKnown RBP12.05□□□□□ -0.48
LIG1-217ENST00000599165 ODF2Q5BJF6 829 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 SIRPB2Q5JXA9 342 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ALS2CLQ60I27 953 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 SLC30A9Q6PML9 568 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 IGF2-ASQ6U949 168 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 BZW1Q7L1Q6 419 aaKnown RBP12.05□□□□□ -0.48
LIG1-217ENST00000599165 CCNJLQ8IV13 435 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ARL14Q8N4G2 192 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 KIAA1524Q8TCG1 905 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ZDHHC1Q8WTX9 485 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 HNRNPLLQ8WVV9 542 aaKnown RBP12.05□□□□□ -0.48
LIG1-217ENST00000599165 GSDMCQ9BYG8 508 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 LRRN3Q9H3W5 708 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 POLR1BQ9H9Y6 1135 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ARFGAP3Q9NP61 516 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 PKD2L2Q9NZM6 624 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 VPS18Q9P253 973 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 LRIT1Q9P2V4 623 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 IMPACTQ9P2X3 320 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ATXN10Q9UBB4 475 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 FAM153AQ9UHL3 310 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 ATXN7L1Q9ULK2 861 aaPredicted RBP12.05□□□□□ -0.48
LIG1-217ENST00000599165 LHX6Q9UPM6 363 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 CAPN6Q9Y6Q1 641 aa12.05□□□□□ -0.48
LIG1-217ENST00000599165 MACROD2A1Z1Q3 448 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 CCDC66A2RUB6 948 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 PRR19A6NJB7 356 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 GAPDHSO14556 408 aaPredicted RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 PPM1DO15297 605 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 MTSS1O43312 755 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 NUDT21O43809 227 aaKnown RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 PYGLP06737 847 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 ACTR1BP42025 376 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 ACTR1AP61163 376 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 ZFP36L1Q07352 338 aaKnown RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 ILF3Q12906 894 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIG1-217ENST00000599165 KLF1Q13351 362 aaPredicted RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 MSLNQ13421 630 aaPredicted RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 OLIG2Q13516 323 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 SPIDRQ14159 915 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 C3orf38Q5JPI3 329 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 PID1Q7Z2X4 250 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 SLITRK4Q8IW52 837 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 Q8N9G6 341 aaPredicted RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 FGF11Q92914 225 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 CALR3Q96L12 384 aaKnown RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 VAT1Q99536 393 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 FOXP3Q9BZS1 431 aa12.04□□□□□ -0.48
LIG1-217ENST00000599165 KLHL8Q9P2G9 620 aaPredicted RBP12.04□□□□□ -0.48
LIG1-217ENST00000599165 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIG1-217ENST00000599165 TCRBV7S2A1N4TA0A589 114 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 CDRT15L2A8MXV6 281 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 GPR39O43194 453 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 FTCDO95954 541 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 EPOP01588 193 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 SLC4A1P02730 911 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 HOXB3P14651 431 aaPredicted RBP12.03□□□□□ -0.48
LIG1-217ENST00000599165 ZNF8P17098 575 aaPredicted RBP12.03□□□□□ -0.48
LIG1-217ENST00000599165 CCKBRP32239 447 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 ADRA1AP35348 466 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 RWDD2BP57060 319 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 OR1D5P58170 312 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 CFHR1Q03591 330 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 PTPRCAPQ14761 206 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 SLC1A5Q15758 541 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 ZNF574Q6ZN55 896 aaPredicted RBP12.03□□□□□ -0.48
LIG1-217ENST00000599165 ADGRG6Q86SQ4 1221 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 KIAA1328Q86T90 577 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 GALNT13Q8IUC8 556 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 KLHDC8BQ8IXV7 354 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 SLC25A41Q8N5S1 370 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 TRAM1L1Q8N609 369 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 IPMKQ8NFU5 416 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 OR6C4Q8NGE1 309 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 WDR48Q8TAF3 677 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 CCHCR1Q8TD31 782 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 GRAMD1AQ96CP6 724 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 LIN37Q96GY3 246 aaPredicted RBP12.03□□□□□ -0.48
LIG1-217ENST00000599165 DCBLD2Q96PD2 775 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 GFM1Q96RP9 751 aaKnown RBP12.03□□□□□ -0.48
LIG1-217ENST00000599165 CDH19Q9H159 772 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 GBA3Q9H227 469 aa12.03□□□□□ -0.48
LIG1-217ENST00000599165 SYNDIG1Q9H7V2 258 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms