RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 UMODL1-AS1Q8N2C9 162 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 STARD8Q92502 1023 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 NUDT22Q9BRQ3 303 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 B3GNT4Q9C0J1 378 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 NOL6Q9H6R4 1146 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 ZDHHC6Q9H6R6 413 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 MBNL1Q9NR56 388 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 LRIT1Q9P2V4 623 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 APPL1Q9UKG1 709 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 TBC1D30Q9Y2I9 924 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 MFHAS1Q9Y4C4 1052 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 MRFAP1Q9Y605 127 aa13.9□□□□□ -0.18
SHKBP1-218ENST00000598907 LOC101059948A0A1B0GTJ6 334 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 WIPF3A6NGB9 483 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 APOC4-APOC2K7ER74 178 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 PGRMC1O00264 195 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 PDE2AO00408 941 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 CAPN5O15484 640 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 TSPAN6O43657 245 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 AP1G1O43747 822 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 RASGRP1O95267 797 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 APOC2P02655 101 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 YPEL5P62699 121 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 SLC10A2Q12908 348 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 MRPL49Q13405 166 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 TMCO3Q6UWJ1 677 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 ZNF572Q7Z3I7 529 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 SETD3Q86TU7 594 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 PIM3Q86V86 326 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 FAM129CQ86XR2 697 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 ARHGAP12Q8IWW6 846 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 NRSN1Q8IZ57 195 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 LZTR1Q8N653 840 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 NPWQ8N729 165 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 GPR156Q8NFN8 814 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 MAIP1Q8WWC4 291 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 CENPTQ96BT3 561 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 NAP1L3Q99457 506 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 C2orf49Q9BVC5 232 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 LRRC19Q9H756 370 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 DONSONQ9NYP3 566 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 SMARCAL1Q9NZC9 954 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 PCDHGA3Q9Y5H0 932 aa13.89□□□□□ -0.19
SHKBP1-218ENST00000598907 CPNE6O95741 557 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 RHOCP08134 193 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 PECAM1P16284 738 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 TCN2P20062 427 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 NR2C2P49116 596 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 NDST2P52849 883 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 YBEYP58557 167 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 GBE1Q04446 702 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 IRF4Q15306 451 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 LONRF2Q1L5Z9 754 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 C14orf28Q4W4Y0 310 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 ANKS6Q68DC2 871 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 ENPP7Q6UWV6 458 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 TFAP2DQ7Z6R9 452 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 CCDC13Q8IYE1 715 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 TTC13Q8NBP0 860 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 FAM46DQ8NEK8 389 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 OR6K2Q8NGY2 324 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 PRR7Q8TB68 274 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 PDXPQ96GD0 296 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 CAPZA3Q96KX2 299 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 OLFM3Q96PB7 478 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 L2HGDHQ9H9P8 463 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 SLC39A1Q9NY26 324 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 DTLQ9NZJ0 730 aa13.88□□□□□ -0.19
SHKBP1-218ENST00000598907 NF1P21359 2839 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 ESPL1Q14674 2120 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 IGHV5-10-1A0A0J9YXX1 117 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 ILVBLA1L0T0 632 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 HGSO14964 777 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 MFSD11O43934 449 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 MMP20O60882 483 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 PDGFAP04085 211 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 MPSTP25325 297 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 ALDH4A1P30038 563 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 OR1E1P30953 314 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 GKP32189 559 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 SERPINB6P35237 376 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 PAFAH1B1P43034 410 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 CCNHP51946 323 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 OR1D5P58170 312 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 DYNLT1P63172 113 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 GALNT2Q10471 571 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 NAA30Q147X3 362 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 NOMO1Q15155 1222 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 CYP1B1Q16678 543 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 WHAMMP3Q1A5X7 153 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 KCTD16Q68DU8 428 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 TCTN3Q6NUS6 607 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 NPNTQ6UXI9 565 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 ZNF783Q6ZMS7 281 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 KDELC2Q7Z4H8 507 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 TAF8Q7Z7C8 310 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 TP53INP2Q8IXH6 220 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 NLGN4XQ8N0W4 816 aa13.87□□□□□ -0.19
SHKBP1-218ENST00000598907 RYBPQ8N488 228 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms