RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ACTN2P35609 894 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 SPAM1P38567 509 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 ADCY8P40145 1251 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 RPIAP49247 311 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 ILF3Q12906 894 aaKnown RBP eCLIP13.74□□□□□ -0.21
UPF1-205ENST00000598209 TAF1AQ15573 450 aaPredicted RBP13.74□□□□□ -0.21
UPF1-205ENST00000598209 SMAD1Q15797 465 aaKnown RBP13.74□□□□□ -0.21
UPF1-205ENST00000598209 ZDHHC20Q5W0Z9 365 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 PDPK2PQ6A1A2 396 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 DENND5AQ6IQ26 1287 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 GUSBP11Q6P575 273 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 DRICH1Q6PGQ1 229 aaPredicted RBP13.74□□□□□ -0.21
UPF1-205ENST00000598209 GALNT15Q8N3T1 639 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 PDCD7Q8N8D1 485 aaKnown RBP13.74□□□□□ -0.21
UPF1-205ENST00000598209 ARL10Q8N8L6 244 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 KYQ8NBH2 561 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 FAM46DQ8NEK8 389 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 IFI44Q8TCB0 444 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 GPBAR1Q8TDU6 330 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 GLYATL1Q969I3 302 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 PBKQ96KB5 322 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 OR2M4Q96R27 311 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 GSDMCQ9BYG8 508 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 LRRC40Q9H9A6 602 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 ARNT2Q9HBZ2 717 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 ARFGAP3Q9NP61 516 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 VPS18Q9P253 973 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 GULP1Q9UBP9 304 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 FEZ2Q9UHY8 353 aaPredicted RBP13.74□□□□□ -0.21
UPF1-205ENST00000598209 MSRB2Q9Y3D2 182 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 PKP3Q9Y446 797 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 GPSM3Q9Y4H4 160 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 ARL5AQ9Y689 179 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 EME2A4GXA9 379 aaPredicted RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 FAM221BA6H8Z2 402 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 C2orf81A6NN90 581 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 USP27XA6NNY8 438 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 STX7O15400 261 aaKnown RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 DNAJC6O75061 913 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 SLC25A14O95258 325 aaPredicted RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 AP2A1O95782 977 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 GP1BAP07359 652 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 LPOP22079 712 aaPredicted RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 MSNP26038 577 aaKnown RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 AK4P27144 223 aaPredicted RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 FDFT1P37268 417 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 CLDN6P56747 220 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 E2F1Q01094 437 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 CTBSQ01459 385 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 MSLNQ13421 630 aaPredicted RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 PTPRCAPQ14761 206 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 PYCR3Q53H96 274 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 ZNF648Q5T619 568 aaPredicted RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 EFL1Q7Z2Z2 1120 aaKnown RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 PRUNE1Q86TP1 453 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 NRROSQ86YC3 692 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 GALNT13Q8IUC8 556 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 PHYKPLQ8IUZ5 450 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 CCDC89Q8N998 374 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 BRSK1Q8TDC3 778 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 ETNK1Q9HBU6 452 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 IL26Q9NPH9 171 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.73□□□□□ -0.21
UPF1-205ENST00000598209 ZNHIT2Q9UHR6 403 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 PADI4Q9UM07 663 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 DRG1Q9Y295 367 aaKnown RBP13.73□□□□□ -0.21
UPF1-205ENST00000598209 PLEKHM1Q9Y4G2 1056 aa13.73□□□□□ -0.21
UPF1-205ENST00000598209 FAM149AA5PLN7 773 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 B4DGG1 531 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 PPFIA2O75334 1257 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 CRTAMO95727 393 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 INSM1Q01101 510 aaPredicted RBP13.72□□□□□ -0.21
UPF1-205ENST00000598209 CHRNA6Q15825 494 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 ATP13A5Q4VNC0 1218 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 PERM1Q5SV97 790 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 HES3Q5TGS1 186 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 SLC30A9Q6PML9 568 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 FAM151BQ6UXP7 276 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 CCNI2Q6ZMN8 369 aaPredicted RBP13.72□□□□□ -0.21
UPF1-205ENST00000598209 TMPRSS12Q86WS5 348 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 MARCH9Q86YJ5 346 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 RASGEF1CQ8N431 466 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 GLIS1Q8NBF1 620 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 GPR156Q8NFN8 814 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 OR4K2Q8NGD2 314 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 DTX3LQ8TDB6 740 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 NAT6Q93015 286 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 MS4A14Q96JA4 679 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 VPS35Q96QK1 796 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 OR2AG1Q9H205 316 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 DPEP2Q9H4A9 486 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 RMI1Q9H9A7 625 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 TRIM39Q9HCM9 518 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 HOMER3Q9NSC5 361 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 SPATS2LQ9NUQ6 558 aaKnown RBP13.72□□□□□ -0.21
UPF1-205ENST00000598209 TAAR2Q9P1P5 351 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 PAK5Q9P286 719 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 ATXN10Q9UBB4 475 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 TMPRSS11EQ9UL52 423 aa13.72□□□□□ -0.21
UPF1-205ENST00000598209 PYCARDQ9ULZ3 195 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms