RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, human

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-208	ENST00000595726	ARGFX	A6NJG6	315 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CALB1	P05937	261 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	IVL	P07476	585 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CCDC172	P0C7W6	258 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	EPHB2	P29323	1055 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SERPINA4	P29622	427 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CASP14	P31944	242 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ETV3	P41162	512 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SEPHS1	P49903	392 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	GFER	P55789	205 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RPS18	P62269	152 aa	Known RBP	13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TPM4	P67936	248 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	HHEX	Q03014	270 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	DNASE1L3	Q13609	305 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CNGA3	Q16281	694 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	E4F1	Q66K89	784 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RFLNA	Q6ZTI6	216 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	HSD11B1L	Q7Z5J1	315 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TRIM74	Q86UV6	250 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RASGRP3	Q8IV61	690 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	JOSD2	Q8TAC2	188 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	OR2M4	Q96R27	311 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	OR6C1	Q96RD1	312 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TUBGCP5	Q96RT8	1024 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TBC1D10A	Q9BXI6	508 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SLC29A3	Q9BZD2	475 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ACTL8	Q9H568	366 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PDF	Q9HBH1	243 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ADAM22	Q9P0K1	906 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	LNPEP	Q9UIQ6	1025 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PRKAB1	Q9Y478	270 aa		13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	13.64	□□□□□ -0.23
SHKBP1-208	ENST00000595726	NIPBL	Q6KC79	2804 aa	eCLIP	13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726		A0A0U1RQS6	177 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	C2CD4B	A6NLJ0	364 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	NDUFA10	O95299	355 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CBX6	O95503	412 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	YBEY	P58557	167 aa	Predicted RBP	13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	FANCC	Q00597	558 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	BCL2L1	Q07817	233 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PEX6	Q13608	980 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PYCR3	Q53H96	274 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RAET1G	Q6H3X3	334 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726		Q6ZVL8	140 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ZC3H18	Q86VM9	953 aa	Known RBP	13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TTC13	Q8NBP0	860 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	C3orf20	Q8ND61	904 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RANBP9	Q96S59	729 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ING2	Q9H160	280 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PADI1	Q9ULC6	663 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PCDHGA6	Q9Y5G7	932 aa		13.63	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CCDC168	Q8NDH2	2452 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TCRBV5S1A1T	A0A578	114 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	GOLGA6L19	H0YKK7	550 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TRAFD1	O14545	582 aa	Predicted RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CCNYL3	P0C7X3	344 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	KRT3	P12035	628 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TNFAIP3	P21580	790 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	NFKBIA	P25963	317 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SDC4	P31431	198 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PBX1	P40424	430 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PTPN9	P43378	593 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	HDAC4	P56524	1084 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	POLR2L	P62875	67 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ASIC2	Q16515	512 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PARP15	Q460N3	678 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	FIGN	Q5HY92	759 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SLC6A19	Q695T7	634 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RBMXL3	Q8N7X1	1067 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SNRNP40	Q96DI7	357 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	DTD2	Q96FN9	168 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SCARF2	Q96GP6	870 aa	Predicted RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CELF6	Q96J87	481 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SELENOO	Q9BVL4	669 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ACSS2	Q9NR19	701 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ASF1B	Q9NVP2	202 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TAS2R14	Q9NYV8	317 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	AIPL1	Q9NZN9	384 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TBC1D29	Q9UFV1	150 aa		13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.62	□□□□□ -0.23
SHKBP1-208	ENST00000595726	HNRNPR	O43390	633 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CREB3	O43889	395 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PRAMEF11	O60813	436 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	SPAG6	O75602	509 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	HEXIM1	O94992	359 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TIAF1	O95411	115 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RECK	O95980	971 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	TYRP1	P17643	537 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	RFC1	P35251	1148 aa	Predicted RBP	13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	GARS	P41250	739 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PRKCI	P41743	596 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	LEPR	P48357	1165 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	CSNK1D	P48730	415 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	NDST2	P52849	883 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	UBASH3A	P57075	661 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	PAPD7	Q5XG87	772 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	ACAD10	Q6JQN1	1059 aa		13.61	□□□□□ -0.23
SHKBP1-208	ENST00000595726	DNAJC24	Q6P3W2	148 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms