RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PRCPP42785 496 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 NIPAL4Q0D2K0 466 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 ARL16Q0P5N6 197 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 MED22Q15528 200 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 NAB2Q15742 525 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 ADIPOQQ15848 244 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 CCDC96Q2M329 555 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 MYLK3Q32MK0 819 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 TMEM35AQ53FP2 167 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 SLC9B2Q86UD5 537 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 ARHGAP12Q8IWW6 846 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 MUC20Q8N307 709 aaPredicted RBP6.18□□□□□ -1.42
SS18-214ENST00000580003 IL17RCQ8NAC3 791 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 OR13A1Q8NGR1 328 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 WDFY2Q96P53 400 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 NODALQ96S42 347 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 SYT17Q9BSW7 474 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 KRTAP2-2Q9BYT5 123 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 SIL1Q9H173 461 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 FKRPQ9H9S5 495 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 KLHL1Q9NR64 748 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 CWC15Q9P013 229 aaKnown RBP6.18□□□□□ -1.42
SS18-214ENST00000580003 KLHL20Q9Y2M5 609 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 XPNPEP2O43895 674 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 LMX1BO60663 402 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 CRYAAP02489 173 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 PIK3CAP42336 1068 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 FMO5P49326 533 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 CLCN3P51790 818 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 ISL1P61371 349 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 TFAP4Q01664 338 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 HYAL1Q12794 435 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 DDX10Q13206 875 aaKnown RBP6.17□□□□□ -1.42
SS18-214ENST00000580003 GTF2H2Q13888 395 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 GTF2H2CQ6P1K8 395 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 NCEH1Q6PIU2 408 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 SEPT14Q6ZU15 432 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 METTL27Q8N6F8 245 aaPredicted RBP6.17□□□□□ -1.42
SS18-214ENST00000580003 THAP6Q8TBB0 222 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 HDAC2Q92769 488 aaKnown RBP6.17□□□□□ -1.42
SS18-214ENST00000580003 PCYT2Q99447 389 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 SMC4Q9NTJ3 1288 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 UBA2Q9UBT2 640 aaPredicted RBP6.17□□□□□ -1.42
SS18-214ENST00000580003 ZNF69Q9UC07 566 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 STK39Q9UEW8 545 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 OR2W1Q9Y3N9 320 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 ADAM18Q9Y3Q7 739 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 ZNF711Q9Y462 761 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 PIAS3Q9Y6X2 628 aa6.17□□□□□ -1.42
SS18-214ENST00000580003 TDRD9Q8NDG6 1382 aaKnown RBP6.17□□□□□ -1.42
SS18-214ENST00000580003 HCRTR2O43614 444 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 RNASEH2AO75792 299 aaKnown RBP6.16□□□□□ -1.42
SS18-214ENST00000580003 DDX58O95786 925 aaKnown RBP6.16□□□□□ -1.42
SS18-214ENST00000580003 POLR2CP19387 275 aaPredicted RBP6.16□□□□□ -1.42
SS18-214ENST00000580003 MT3P25713 68 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 ARL3P36405 182 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 UBA7P41226 1012 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 AMPHP49418 695 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 TERF1P54274 439 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 PDE1CQ14123 709 aaPredicted RBP6.16□□□□□ -1.42
SS18-214ENST00000580003 KRT32Q14532 448 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 ZNF234Q14588 700 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 PNLIPRP3Q17RR3 467 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 STPG1Q5TH74 334 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 HAUS3Q68CZ6 603 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 C18orf63Q68DL7 685 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 PXKQ7Z7A4 578 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 RNF168Q8IYW5 571 aaPredicted RBP6.16□□□□□ -1.42
SS18-214ENST00000580003 TEX19Q8NA77 164 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 ACVR1CQ8NER5 493 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 DMBX1Q8NFW5 382 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 POMGNT1Q8WZA1 660 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 PADI3Q9ULW8 664 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 MTMR6Q9Y217 621 aa6.16□□□□□ -1.42
SS18-214ENST00000580003 R3HDM2Q9Y2K5 976 aaKnown RBP6.16□□□□□ -1.42
SS18-214ENST00000580003 TAF1P21675 1872 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 A0A0B4J293 547 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 KCNN4O15554 427 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 WDR1O75083 606 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 CDH2P19022 906 aaPredicted RBP6.15□□□□□ -1.42
SS18-214ENST00000580003 PAX3P23760 479 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 APOBEC1P41238 236 aaKnown RBP6.15□□□□□ -1.42
SS18-214ENST00000580003 PITX1P78337 314 aaPredicted RBP6.15□□□□□ -1.42
SS18-214ENST00000580003 MRPS34P82930 218 aaKnown RBP6.15□□□□□ -1.42
SS18-214ENST00000580003 LRMPQ12912 555 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 CDC16Q13042 620 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 ASB18Q6ZVZ8 466 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 DSG4Q86SJ6 1040 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 NRROSQ86YC3 692 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 MAP7D3Q8IWC1 876 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 ADSSL1Q8N142 457 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 KBTBD3Q8NAB2 608 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 PPHLN1Q8NEY8 458 aaKnown RBP6.15□□□□□ -1.42
SS18-214ENST00000580003 OR1J2Q8NGS2 313 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 OR5R1Q8NH85 324 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 HES6Q96HZ4 224 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 SEPT5Q99719 369 aaPredicted RBP6.15□□□□□ -1.42
SS18-214ENST00000580003 PDZD7Q9H5P4 517 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 KRT84Q9NSB2 600 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 COPG2Q9UBF2 871 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms