RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ZNHIT2Q9UHR6 403 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 PADI4Q9UM07 663 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 WASF3Q9UPY6 502 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 SLC17A4Q9Y2C5 497 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 MSRB2Q9Y3D2 182 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 LY6G6EA0A0G2JKS1 128 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 STX7O15400 261 aaKnown RBP19.34■□□□□ 0.69
SS18-209ENST00000578595 DKK1O94907 266 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 IVLP07476 585 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 AK4P27144 223 aaPredicted RBP19.34■□□□□ 0.69
SS18-209ENST00000578595 SPAM1P38567 509 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 DCDC1P59894 354 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 E2F1Q01094 437 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 PARP6Q2NL67 630 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 LVRNQ6Q4G3 990 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 TMPRSS7Q7RTY8 843 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 PHYKPLQ8IUZ5 450 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 TRAM1L1Q8N609 369 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 MAIP1Q8WWC4 291 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 NAT6Q93015 286 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 COX14Q96I36 57 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 PRKAB1Q9Y478 270 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 OAS3Q9Y6K5 1087 aaKnown RBP19.34■□□□□ 0.69
SS18-209ENST00000578595 U3KQA8 63 aa19.34■□□□□ 0.69
SS18-209ENST00000578595 C1QTNF9BB2RNN3 333 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 E7EVH7 732 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 METTL18O95568 372 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 C1QTNF9P0C862 333 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 MSNP26038 577 aaKnown RBP19.33■□□□□ 0.68
SS18-209ENST00000578595 HMGCLP35914 325 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 ADCY8P40145 1251 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 ACTR1BP42025 376 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 ACTR1AP61163 376 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 SMAD1Q15797 465 aaKnown RBP19.33■□□□□ 0.68
SS18-209ENST00000578595 ZNF648Q5T619 568 aaPredicted RBP19.33■□□□□ 0.68
SS18-209ENST00000578595 FAM151BQ6UXP7 276 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 UNQ6494/PRO21346Q6UXR6 183 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 CHST15Q7LFX5 561 aaPredicted RBP19.33■□□□□ 0.68
SS18-209ENST00000578595 GSTA5Q7RTV2 222 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 TMPRSS12Q86WS5 348 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 TTC30BQ8N4P2 665 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 OR2AG1Q9H205 316 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 LRRC40Q9H9A6 602 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 TRNAU1APQ9NX07 287 aaKnown RBP19.33■□□□□ 0.68
SS18-209ENST00000578595 ARL5AQ9Y689 179 aa19.33■□□□□ 0.68
SS18-209ENST00000578595 C2orf81A6NN90 581 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 KIF5CO60282 957 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 FUCA1P04066 466 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 STIP1P31948 543 aaKnown RBP19.32■□□□□ 0.68
SS18-209ENST00000578595 CTBSQ01459 385 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 SEPT6Q14141 434 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 KIF26BQ2KJY2 2108 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 PERM1Q5SV97 790 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 CRTC3Q6UUV7 619 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 SLC35F6Q8N357 371 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 GLYATL1Q969I3 302 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 PLEKHG4BQ96PX9 1271 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 TAAR2Q9P1P5 351 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 VPS18Q9P253 973 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 NFKBIL1Q9UBC1 381 aaPredicted RBP19.32■□□□□ 0.68
SS18-209ENST00000578595 JRKLQ9Y4A0 524 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 PLEKHM1Q9Y4G2 1056 aa19.32■□□□□ 0.68
SS18-209ENST00000578595 GLYATL1P3A0A0U1RQE8 302 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 EME2A4GXA9 379 aaPredicted RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 PSMD3O43242 534 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 OPA1O60313 960 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 MTX2O75431 263 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 CRTAMO95727 393 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 GP1BAP07359 652 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 ACP5P13686 325 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 LPOP22079 712 aaPredicted RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 ADRA1AP35348 466 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 PPM1FP49593 454 aaPredicted RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 TMPRSS15P98073 1019 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 INSM1Q01101 510 aaPredicted RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 PEX6Q13608 980 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 PTPRCAPQ14761 206 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 TAF1AQ15573 450 aaPredicted RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 OASLQ15646 514 aaKnown RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 PLA2G4EQ3MJ16 856 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 ZDHHC20Q5W0Z9 365 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 PDPK2PQ6A1A2 396 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 RANBP10Q6VN20 620 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 PDCD7Q8N8D1 485 aaKnown RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 GPBAR1Q8TDU6 330 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 ZDHHC1Q8WTX9 485 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 CCDC74AQ96AQ1 378 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 TTC25Q96NG3 672 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 CCDC3Q9BQI4 270 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 PIH1D1Q9NWS0 290 aaKnown RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.31■□□□□ 0.68
SS18-209ENST00000578595 IL17CQ9P0M4 197 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 CNOT6Q9ULM6 557 aaKnown RBP19.31■□□□□ 0.68
SS18-209ENST00000578595 CLCA2Q9UQC9 943 aa19.31■□□□□ 0.68
SS18-209ENST00000578595 PIKFYVEQ9Y2I7 2098 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 ETS1P14921 441 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 TARDBPQ13148 414 aaKnown RBP eCLIP19.3■□□□□ 0.68
SS18-209ENST00000578595 GTF2H3Q13889 308 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 ATP13A5Q4VNC0 1218 aa19.3■□□□□ 0.68
SS18-209ENST00000578595 PYCR3Q53H96 274 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms