RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CARMIL1Q5VZK9 1371 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 A0A087X0M5 115 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 A0A0U1RQG5 324 aaPredicted RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 A0A1B0GX30 115 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 USO1O60763 962 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 KRT36O76013 467 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 CAMTA2O94983 1202 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 CCNDBP1O95273 360 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 IPO7O95373 1038 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 EIF2S1P05198 315 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 MYOD1P15172 320 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 MCCP23508 829 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 MCM3P25205 808 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 APOBEC1P41238 236 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 NIPAL4Q0D2K0 466 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 KRT32Q14532 448 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 GPATCH4Q5T3I0 446 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 SNX30Q5VWJ9 437 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 HAUS3Q68CZ6 603 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 NCEH1Q6PIU2 408 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 SEPT14Q6ZU15 432 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 CUZD1Q86UP6 607 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 ADSSL1Q8N142 457 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 GPATCH11Q8N954 259 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 ACVR1CQ8NER5 493 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 BBS10Q8TAM1 723 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 ARHGEF2Q92974 986 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 HARBI1Q96MB7 349 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 MUC13Q9H3R2 512 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 SMC4Q9NTJ3 1288 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 ZNF711Q9Y462 761 aa5.16□□□□□ -1.58
NUP88-213ENST00000576862 LAS1LQ9Y4W2 734 aaKnown RBP5.16□□□□□ -1.58
NUP88-213ENST00000576862 NOTCH4Q99466 2003 aa5.15□□□□□ -1.58
NUP88-213ENST00000576862 LILRA5A6NI73 299 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 M0QZ24 198 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 JRKO75564 520 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 SLC25A12O75746 678 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 ZNF432O94892 652 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 CDH1P12830 882 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 UBA1P22314 1058 aaKnown RBP5.15□□□□□ -1.59
NUP88-213ENST00000576862 DGKAP23743 735 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 CHMP24386 653 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 TAS2R38P59533 333 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 PDE1BQ01064 536 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 ARL16Q0P5N6 197 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 DCST1Q5T197 706 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 C9orf139Q6ZV77 190 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 SMIM29Q86T20 159 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 EXOC3L1Q86VI1 746 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 RNF113BQ8IZP6 322 aaKnown RBP5.15□□□□□ -1.59
NUP88-213ENST00000576862 TEX19Q8NA77 164 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 KBTBD3Q8NAB2 608 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 TAAR8Q969N4 342 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 ITPAQ9BY32 194 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 PLEKHA5Q9HAU0 1116 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 EHD2Q9NZN4 543 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 RALYQ9UKM9 306 aaKnown RBP5.15□□□□□ -1.59
NUP88-213ENST00000576862 ICAM5Q9UMF0 924 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 PCDHAC2Q9Y5I4 1007 aa5.15□□□□□ -1.59
NUP88-213ENST00000576862 PRDM2Q13029 1718 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 A0A087WYN8 130 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 LIPT2A6NK58 231 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 HCRTR2O43614 444 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 LAMP2P13473 410 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 NFKBIAP25963 317 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 MAPK4P31152 587 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 CLDN20P56880 219 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 ISL1P61371 349 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 GOLGA8DPQ0D2H9 430 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 TROAPQ12815 778 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 LRIF1Q5T3J3 769 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 C18orf63Q68DL7 685 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 FAAH2Q6GMR7 532 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 TRNP1Q6NT89 227 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 FAM180BQ6P0A1 224 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 FOXL2NBQ6ZUU3 175 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 MAATS1Q7Z4T9 603 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 TBC1D1Q86TI0 1168 aaPredicted RBP5.14□□□□□ -1.59
NUP88-213ENST00000576862 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.14□□□□□ -1.59
NUP88-213ENST00000576862 MUC20Q8N307 709 aaPredicted RBP5.14□□□□□ -1.59
NUP88-213ENST00000576862 TMTC2Q8N394 836 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 ANKRD52Q8NB46 1076 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 HDAC2Q92769 488 aaKnown RBP5.14□□□□□ -1.59
NUP88-213ENST00000576862 DIAPH3Q9NSV4 1193 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 TERF2IPQ9NYB0 399 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 COPG2Q9UBF2 871 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 OR14J1Q9UGF5 321 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 OR2W1Q9Y3N9 320 aa5.14□□□□□ -1.59
NUP88-213ENST00000576862 SCN5AQ14524 2016 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 PGPEP1LA6NFU8 196 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 FAM90A26D6RGX4 464 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 F5H0A9 414 aaPredicted RBP5.13□□□□□ -1.59
NUP88-213ENST00000576862 BMPR1BO00238 502 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 ATP2A1O14983 1001 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 XPNPEP2O43895 674 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 RNASEH2AO75792 299 aaKnown RBP5.13□□□□□ -1.59
NUP88-213ENST00000576862 DDX58O95786 925 aaKnown RBP5.13□□□□□ -1.59
NUP88-213ENST00000576862 AMD1P17707 334 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 USP8P40818 1118 aa5.13□□□□□ -1.59
NUP88-213ENST00000576862 UBA7P41226 1012 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms