RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 IRX4P78413 519 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 CDK3Q00526 305 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 BNC1Q01954 994 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 CAV1Q03135 178 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 PDIA2Q13087 525 aaKnown RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 CBLBQ13191 982 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 PDE1CQ14123 709 aaPredicted RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 TEAD4Q15561 434 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 HIF1AQ16665 826 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 ATP13A5Q4VNC0 1218 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 TRIM61Q5EBN2 209 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 DNAJC21Q5F1R6 531 aaKnown RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 PLA2G2CQ5R387 149 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 HP1BP3Q5SSJ5 553 aaPredicted RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 SLC23A3Q6PIS1 610 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 ADAMTSL4Q6UY14 1074 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 NLRP9Q7RTR0 991 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 PTAR1Q7Z6K3 402 aaPredicted RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 IQCHQ86VS3 1027 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 HEATR4Q86WZ0 1026 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 SPATS2Q86XZ4 545 aaKnown RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 IGDCC3Q8IVU1 814 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 PDIK1LQ8N165 341 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 SLC22A18ASQ8N1D0 253 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 DCLK2Q8N568 766 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 OR13J1Q8NGT2 312 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 CEP76Q8TAP6 659 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 FAM174AQ8TBP5 190 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 ZNF398Q8TD17 642 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 DTX3LQ8TDB6 740 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 PTCD2Q8WV60 388 aaKnown RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 IFT81Q8WYA0 676 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 PEX13Q92968 403 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 HDAC10Q969S8 669 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 MFSD3Q96ES6 412 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 FCRL3Q96P31 734 aaPredicted RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 WDR83Q9BRX9 315 aaKnown RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 ZSCAN5AQ9BUG6 496 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 TEX101Q9BY14 249 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 FAM96AQ9H5X1 160 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 ASB8Q9H765 288 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 CAPN10Q9HC96 672 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 GDF3Q9NR23 364 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 GPR27Q9NS67 375 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 TREX1Q9NSU2 369 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 ZDHHC18Q9NUE0 388 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 SAMD15Q9P1V8 674 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 NCDNQ9UBB6 729 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 APPL1Q9UKG1 709 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 TMPRSS11EQ9UL52 423 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 CNOT6Q9ULM6 557 aaKnown RBP8.51□□□□□ -1.05
NUP88-211ENST00000575976 SLC6A14Q9UN76 642 aa8.51□□□□□ -1.05
NUP88-211ENST00000575976 MYLKQ15746 1914 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ZCWPW2A0A1B0GU75 182 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 FAM237BA0A1B0GVD1 139 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 CCDC162PA2VCL2 907 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 E7ESA3 106 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 TOR1BO14657 336 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 KHNYNO15037 678 aaKnown RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 MAGEC1O60732 1142 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 PRAMEF1O95521 474 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 GOT2P00505 430 aaKnown RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 PYGLP06737 847 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 HOXC4P09017 264 aaPredicted RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 ZNF806P0C7X5 589 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 PRSS56P0CW18 603 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ECHS1P30084 290 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ELK3P41970 407 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 CDKN1CP49918 316 aaPredicted RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 THOP1P52888 689 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 C21orf59P57076 290 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 SPEM2Q0P670 501 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 OVGP1Q12889 678 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ITGA9Q13797 1035 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 HLTFQ14527 1009 aaKnown RBP eCLIP8.5□□□□□ -1.05
NUP88-211ENST00000575976 NFATC4Q14934 902 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 FASTKD3Q14CZ7 662 aaKnown RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 KIF19Q2TAC6 998 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ANKRD20A4Q4UJ75 823 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ZRANB3Q5FWF4 1079 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 PRAMEF14Q5SWL7 426 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ZNF648Q5T619 568 aaPredicted RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 ARMC3Q5W041 872 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 PDPK2PQ6A1A2 396 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 TCEAL6Q6IPX3 200 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ENPP7Q6UWV6 458 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 CENPUQ71F23 418 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 RABEPKQ7Z6M1 372 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 TMEM135Q86UB9 458 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 TRIM74Q86UV6 250 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ANKMY2Q8IV38 441 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 IFT20Q8IY31 132 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 FBXO36Q8NEA4 188 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 BTN2A2Q8WVV5 523 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 TCEAL3Q969E4 200 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 GLYATL1Q969I3 302 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 SKA1Q96BD8 255 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 ZNF669Q96BR6 464 aaPredicted RBP8.5□□□□□ -1.05
NUP88-211ENST00000575976 LRRC39Q96DD0 335 aa8.5□□□□□ -1.05
NUP88-211ENST00000575976 STAMBPL1Q96FJ0 436 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms